Variant report

Variant	rs10104573
Chromosome Location	chr8:131151843-131151844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10099820	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103052	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10109827	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251129	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13267150	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16904203	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2395992	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2670886	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2670887	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2791339	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28413707	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28736405	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28857237	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4733570	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6415509	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66513387	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722357	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7825499	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7830887	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7836266	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838372	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131076200-131170600	Weak transcription	Small Intestine	intestine
2	chr8:131116000-131193800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:131128200-131154800	Weak transcription	Colonic Mucosa	Colon
4	chr8:131128800-131186800	Weak transcription	Fetal Brain Male	brain
5	chr8:131130400-131180200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:131137600-131154800	Weak transcription	Psoas Muscle	Psoas
7	chr8:131138800-131164600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr8:131139000-131156000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr8:131140000-131156400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr8:131140000-131169200	Weak transcription	Brain Angular Gyrus	brain
11	chr8:131141400-131164400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr8:131142200-131153000	Strong transcription	Fetal Muscle Leg	muscle
13	chr8:131143000-131153200	Strong transcription	Placenta	Placenta
14	chr8:131143000-131155200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr8:131143400-131153400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:131144000-131156400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:131145800-131155400	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:131146400-131154800	Weak transcription	Gastric	stomach
19	chr8:131146400-131158200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr8:131146600-131153400	Weak transcription	Right Ventricle	heart
21	chr8:131146600-131178800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr8:131146600-131206000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr8:131147200-131163800	Weak transcription	Colon Smooth Muscle	Colon
24	chr8:131147400-131194400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr8:131147600-131152600	Strong transcription	HSMM	muscle
26	chr8:131147600-131154200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:131147600-131154800	Weak transcription	Stomach Mucosa	stomach
28	chr8:131147600-131155800	Weak transcription	Fetal Kidney	kidney
29	chr8:131147600-131159800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr8:131147600-131162000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:131147600-131170400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr8:131147600-131199800	Weak transcription	Pancreas	Pancrea
33	chr8:131147800-131156200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:131148000-131183800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr8:131148000-131194400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr8:131148200-131154800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr8:131148400-131154800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr8:131148400-131169800	Weak transcription	K562	blood
39	chr8:131148600-131153400	Weak transcription	Right Atrium	heart
40	chr8:131148600-131153800	Strong transcription	HUVEC	blood vessel
41	chr8:131148600-131154400	Weak transcription	GM12878-XiMat	blood
42	chr8:131148600-131164800	Weak transcription	Brain Anterior Caudate	brain
43	chr8:131148600-131169800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:131148600-131170200	Weak transcription	Fetal Intestine Small	intestine
45	chr8:131148800-131153000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr8:131149000-131152200	Weak transcription	Fetal Heart	heart
47	chr8:131149000-131154800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr8:131149000-131162000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr8:131149000-131168000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr8:131149000-131170600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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