Variant report

Variant	rs10104865
Chromosome Location	chr8:62684293-62684294
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:62681611..62684475-chr8:62685086..62689065,3	K562	blood:
2	chr8:62679967..62681573-chr8:62682156..62684325,2	MCF-7	breast:
3	chr8:62672838..62674719-chr8:62683973..62685855,2	K562	blood:
4	chr8:62623606..62628376-chr8:62679233..62685137,7	K562	blood:
5	chr8:62674722..62676651-chr8:62683722..62685414,2	K562	blood:
6	chr8:62681389..62684437-chr8:62686208..62689276,4	K562	blood:
7	chr8:62680744..62684386-chr8:62685245..62688258,3	MCF-7	breast:
8	chr8:62677584..62679804-chr8:62681714..62684459,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1015905	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11786133	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1874219	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4738921	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62679600-62685800	Weak transcription	Fetal Lung	lung
2	chr8:62679800-62685200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:62680200-62685200	Weak transcription	Adipose Nuclei	Adipose
4	chr8:62680400-62684600	Weak transcription	NHDF-Ad	bronchial
5	chr8:62680400-62685200	Weak transcription	Osteobl	bone
6	chr8:62680400-62685400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:62680800-62685400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:62680800-62685400	Weak transcription	NHLF	lung
9	chr8:62681400-62685200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:62681600-62684800	Weak transcription	Hela-S3	cervix
11	chr8:62682800-62685400	Enhancers	A549	lung
12	chr8:62683200-62685400	Weak transcription	HepG2	liver
13	chr8:62684000-62685200	Weak transcription	Pancreas	Pancrea
14	chr8:62684000-62685800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:62684200-62686000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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