Variant report

Variant	rs10105250
Chromosome Location	chr8:103028289-103028290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10505016	0.81[CHB][hapmap];0.97[CHD][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs1269713	0.81[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.98[ASN][1000 genomes]
rs1269714	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1269715	0.95[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.98[ASN][1000 genomes]
rs1269716	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1351063	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2187193	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2226768	0.98[ASN][1000 genomes]
rs2387330	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2860153	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.95[ASN][1000 genomes]
rs4734051	0.95[CHD][hapmap];0.89[ASN][1000 genomes]
rs4734610	0.84[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4734611	0.98[ASN][1000 genomes]
rs4734613	0.98[ASN][1000 genomes]
rs6468808	0.89[ASN][1000 genomes]
rs7006931	0.89[ASN][1000 genomes]
rs7357558	0.96[ASN][1000 genomes]
rs7829974	0.91[ASN][1000 genomes]
rs7833943	0.85[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv891231	chr8:103001914-103076379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891234	chr8:103020391-103113701	Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10105250	NCALD	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103010200-103028400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:103010800-103028400	Weak transcription	Aorta	Aorta
3	chr8:103022400-103028600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr8:103024800-103028400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:103026000-103028400	Weak transcription	Primary T cells from cord blood	blood
6	chr8:103026200-103028600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:103026400-103035200	Weak transcription	Left Ventricle	heart
8	chr8:103026400-103038800	Weak transcription	Right Ventricle	heart
9	chr8:103026600-103028400	Weak transcription	Fetal Heart	heart
10	chr8:103027000-103028800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:103027800-103030400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:103028000-103028800	ZNF genes & repeats	Fetal Muscle Leg	muscle
13	chr8:103028200-103028400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:103028200-103028400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:103028200-103028800	ZNF genes & repeats	Ovary	ovary
16	chr8:103028200-103028800	ZNF genes & repeats	Pancreas	Pancrea
17	chr8:103028200-103029200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr8:103028200-103030000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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