Variant report

Variant	rs10105305
Chromosome Location	chr8:39794755-39794756
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10103702	0.90[AFR][1000 genomes]
rs10105007	1.00[AMR][1000 genomes]
rs10108429	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39771600-39797200	Weak transcription	Right Atrium	heart
2	chr8:39785600-39805800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:39792400-39797400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:39792600-39795400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:39792600-39796400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:39792800-39795400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:39792800-39795400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:39793400-39798600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:39794200-39796800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr8:39794400-39797200	Weak transcription	K562	blood
11	chr8:39794400-39797400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:39794400-39797400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:39794400-39797400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr8:39794400-39801600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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