Variant report
| Variant | rs10105880 |
|---|---|
| Chromosome Location | chr8:92255267-92255268 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:92243556..92245639-chr8:92254576..92256371,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10089490 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10108620 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10111757 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10112520 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10113395 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10956798 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12334299 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12334426 | 1.00[ASN][1000 genomes] |
| rs28475339 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28539046 | 0.96[ASN][1000 genomes] |
| rs28539271 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62526735 | 0.96[ASN][1000 genomes] |
| rs62526740 | 0.96[ASN][1000 genomes] |
| rs62526742 | 0.96[ASN][1000 genomes] |
| rs62527422 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62527424 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62527425 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028628 | chr8:91680968-92418954 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv539672 | chr8:91680968-92418954 | Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 3 | esv2758623 | chr8:91974499-92273724 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 4 | esv2759629 | chr8:91974499-92273724 | Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:92249400-92260400 | Weak transcription | Fetal Lung | lung |
