Variant report

Variant	rs10106371
Chromosome Location	chr8:52723552-52723553
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4607598	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4873614	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4873615	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6473662	0.83[AMR][1000 genomes]
rs7459885	0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs7816619	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9298468	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv831316	chr8:52660353-52842928	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52714400-52731800	Weak transcription	Thymus	Thymus
2	chr8:52716600-52728400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:52717600-52735200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr8:52717600-52741800	Weak transcription	Aorta	Aorta
5	chr8:52717800-52733000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:52717800-52734600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:52718000-52734800	Weak transcription	Dnd41	blood
8	chr8:52719400-52741800	Weak transcription	Esophagus	oesophagus
9	chr8:52719800-52733000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr8:52719800-52734000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr8:52719800-52734600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:52720000-52731400	Weak transcription	Primary B cells from cord blood	blood
13	chr8:52720000-52735000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:52720200-52733000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr8:52720400-52733000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr8:52720800-52728600	Weak transcription	Brain Hippocampus Middle	brain
17	chr8:52720800-52735000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr8:52720800-52737000	Weak transcription	Brain Anterior Caudate	brain
19	chr8:52721000-52741000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr8:52721200-52733400	Weak transcription	Fetal Thymus	thymus
21	chr8:52721400-52727400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr8:52722000-52771400	Weak transcription	Gastric	stomach
23	chr8:52722200-52727800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr8:52722200-52728400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:52722200-52733600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr8:52722200-52733600	Weak transcription	Left Ventricle	heart
27	chr8:52722200-52734800	Weak transcription	Lung	lung
28	chr8:52722200-52752000	Weak transcription	Pancreas	Pancrea
29	chr8:52722400-52724400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr8:52722400-52727400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:52722400-52729400	Weak transcription	Adipose Nuclei	Adipose
32	chr8:52722400-52733400	Weak transcription	Liver	Liver
33	chr8:52722400-52733400	Weak transcription	Ovary	ovary
34	chr8:52722400-52735000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr8:52722400-52741800	Weak transcription	Right Ventricle	heart
36	chr8:52722600-52731000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr8:52722600-52733200	Weak transcription	Primary T cells from cord blood	blood
38	chr8:52722600-52734600	Weak transcription	Fetal Kidney	kidney
39	chr8:52722600-52735000	Weak transcription	HSMM	muscle
40	chr8:52722800-52724600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr8:52722800-52724800	Weak transcription	Fetal Lung	lung
42	chr8:52722800-52728800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:52722800-52730800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr8:52722800-52730800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr8:52722800-52730800	Weak transcription	NHDF-Ad	bronchial
46	chr8:52722800-52731800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr8:52722800-52733200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:52722800-52733400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr8:52722800-52733600	Weak transcription	Fetal Stomach	stomach
50	chr8:52722800-52733600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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