Variant report

Variant	rs10106491
Chromosome Location	chr8:96038959-96038960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96029323..96031778-chr8:96037599..96040079,2	K562	blood:
2	chr8:95956652..95964127-chr8:96035798..96039465,14	MCF-7	breast:
3	chr6:151710576..151712846-chr8:96037151..96040078,2	MCF-7	breast:
4	chr8:96037199..96039610-chr8:96084206..96086584,2	K562	blood:
5	chr8:96036158..96039259-chr8:96045836..96048453,3	MCF-7	breast:
6	chr17:27738897..27740398-chr8:96037413..96039702,2	MCF-7	breast:
7	chr8:96037342..96039267-chr8:96086128..96088306,2	MCF-7	breast:
8	chr8:95959680..95964310-chr8:96036583..96039456,6	MCF-7	breast:
9	chr8:96037704..96039213-chr8:96145845..96147628,2	K562	blood:
10	chr8:95835209..95837028-chr8:96037260..96039348,2	MCF-7	breast:
11	chr8:95906811..95909706-chr8:96035495..96039299,4	K562	blood:
12	chr8:95906302..95910709-chr8:96035472..96039639,10	MCF-7	breast:
13	chr8:95905055..95911257-chr8:96032486..96039313,18	MCF-7	breast:
14	chr8:95959784..95963292-chr8:96036254..96039616,3	K562	blood:
15	chr8:96037608..96039540-chr8:96126841..96128401,2	K562	blood:
16	chr8:96033508..96040236-chr8:96084539..96089897,8	MCF-7	breast:
17	chr8:96002471..96005226-chr8:96038808..96041557,2	MCF-7	breast:
18	chr8:96037496..96040138-chr8:96124938..96127918,2	MCF-7	breast:
19	chr8:95835151..95838228-chr8:96036599..96039705,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175305	Chromatin interaction
ENSG00000156170	Chromatin interaction
ENSG00000245080	Chromatin interaction
ENSG00000181472	Chromatin interaction
ENSG00000175895	Chromatin interaction
ENSG00000164941	Chromatin interaction
ENSG00000164938	Chromatin interaction
ENSG00000253878	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10086541	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10092003	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10093594	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097930	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10098197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098453	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10100089	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10103841	0.86[EUR][1000 genomes]
rs10105437	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110635	0.97[EUR][1000 genomes]
rs10111154	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10111300	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10112230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113545	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1031388	1.00[ASN][1000 genomes]
rs11774085	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11776189	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779506	0.93[ASN][1000 genomes]
rs11780931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781001	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781040	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781619	0.87[EUR][1000 genomes]
rs11784178	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11786380	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11786878	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13279040	0.87[ASN][1000 genomes]
rs1545480	0.93[ASN][1000 genomes]
rs16917224	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16917233	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2340536	0.87[EUR][1000 genomes]
rs2599711	0.93[ASN][1000 genomes]
rs2599713	1.00[ASN][1000 genomes]
rs2599714	1.00[ASN][1000 genomes]
rs2599715	1.00[ASN][1000 genomes]
rs2678823	1.00[ASN][1000 genomes]
rs2678829	0.93[ASN][1000 genomes]
rs28363725	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28378156	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28406132	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28419772	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28440026	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28477467	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28496357	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28616734	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28651964	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28712702	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34700722	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35518242	0.87[ASN][1000 genomes]
rs4323442	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56901035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57925408	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61596977	0.86[EUR][1000 genomes]
rs6471505	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471506	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6651271	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651272	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985880	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6989862	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7002940	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7008542	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71532343	0.87[ASN][1000 genomes]
rs73276406	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73276417	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73276437	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276439	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812312	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7818688	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7826046	0.83[ASN][1000 genomes]
rs7826196	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7832570	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7842703	0.83[ASN][1000 genomes]
rs7842715	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9297950	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9297951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10106491	C8orf38	Cis_1M	lymphoblastoid	RTeQTL
rs10106491	INTS8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96037800-96039200	Flanking Active TSS	Dnd41	blood
2	chr8:96037800-96070200	Weak transcription	Aorta	Aorta
3	chr8:96038000-96039200	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:96038000-96063800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:96038200-96039000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr8:96038200-96039200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:96038200-96039200	Enhancers	Esophagus	oesophagus
8	chr8:96038200-96039200	Enhancers	Pancreas	Pancrea
9	chr8:96038200-96039200	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr8:96038200-96039800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:96038200-96039800	Enhancers	Left Ventricle	heart
12	chr8:96038200-96042600	Weak transcription	Fetal Stomach	stomach
13	chr8:96038200-96043200	Weak transcription	Fetal Lung	lung
14	chr8:96038200-96045000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr8:96038200-96045400	Weak transcription	Ovary	ovary
16	chr8:96038200-96046000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:96038200-96050200	Weak transcription	Spleen	Spleen
18	chr8:96038200-96054400	Weak transcription	Fetal Kidney	kidney
19	chr8:96038200-96058800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr8:96038200-96059200	Weak transcription	Right Ventricle	heart
21	chr8:96038200-96061000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:96038200-96061200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:96038200-96061200	Weak transcription	Psoas Muscle	Psoas
24	chr8:96038200-96072400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:96038200-96080000	Weak transcription	Colonic Mucosa	Colon
26	chr8:96038400-96039000	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr8:96038400-96039200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr8:96038400-96039400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr8:96038400-96039400	Enhancers	Fetal Thymus	thymus
30	chr8:96038400-96040000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:96038400-96041600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:96038400-96042800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr8:96038400-96043000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr8:96038400-96043200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr8:96038400-96044200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr8:96038400-96044400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr8:96038400-96044400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr8:96038400-96044400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr8:96038400-96044400	Weak transcription	HSMM	muscle
40	chr8:96038400-96044600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:96038400-96044600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:96038400-96044600	Weak transcription	Adipose Nuclei	Adipose
43	chr8:96038400-96044600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr8:96038400-96044800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr8:96038400-96044800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr8:96038400-96044800	Weak transcription	Brain Anterior Caudate	brain
47	chr8:96038400-96044800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr8:96038400-96044800	Weak transcription	Placenta	Placenta
49	chr8:96038400-96044800	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr8:96038400-96045400	Weak transcription	Brain Germinal Matrix	brain

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