Variant report

Variant	rs10106909
Chromosome Location	chr8:126228967-126228968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126225448..126228099-chr8:126228742..126231681,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10089963	1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10093813	1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10093819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095101	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096522	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097568	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098862	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103274	1.00[JPT][hapmap]
rs10109490	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109574	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110958	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112171	0.93[ASN][1000 genomes]
rs10112583	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10216523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283187	1.00[JPT][hapmap]
rs10956230	1.00[JPT][hapmap]
rs2303523	1.00[JPT][hapmap]
rs28469260	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28597078	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28700192	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28867439	0.95[ASN][1000 genomes]
rs3763593	0.95[ASN][1000 genomes]
rs6981647	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7010385	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016677	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73348181	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7357374	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs954889	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9987342	1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv917158	chr8:126101990-126255266	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
4	nsv1034798	chr8:126179383-126241525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126142600-126231400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:126201600-126231200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr8:126201600-126231600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:126201600-126236600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr8:126201800-126230200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:126202200-126232200	Weak transcription	Primary B cells from cord blood	blood
7	chr8:126202600-126237400	Weak transcription	Fetal Thymus	thymus
8	chr8:126202800-126231600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr8:126203200-126231400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr8:126203800-126231000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr8:126204200-126231000	Weak transcription	Brain Angular Gyrus	brain
12	chr8:126204200-126231200	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:126204400-126238600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:126204400-126239600	Weak transcription	Primary T cells from cord blood	blood
15	chr8:126205200-126231200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr8:126205400-126230000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr8:126214400-126237400	Weak transcription	Thymus	Thymus
18	chr8:126214400-126238600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:126214600-126230800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:126214600-126231200	Weak transcription	Fetal Lung	lung
21	chr8:126214600-126231400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr8:126217400-126238600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:126217800-126230400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:126218000-126231600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr8:126220200-126231400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr8:126220400-126231000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr8:126220400-126231200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr8:126222800-126231200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr8:126223000-126229000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr8:126224800-126229000	Weak transcription	HepG2	liver
31	chr8:126226200-126230400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr8:126226600-126231000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr8:126226600-126231000	Weak transcription	Fetal Kidney	kidney
34	chr8:126226600-126231200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:126226600-126231200	Weak transcription	Colon Smooth Muscle	Colon
36	chr8:126226600-126235000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr8:126226800-126229800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr8:126226800-126229800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:126226800-126229800	Weak transcription	Liver	Liver
40	chr8:126226800-126229800	Weak transcription	Fetal Muscle Leg	muscle
41	chr8:126226800-126229800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr8:126226800-126229800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr8:126226800-126229800	Weak transcription	NHDF-Ad	bronchial
44	chr8:126226800-126230000	Weak transcription	Fetal Intestine Large	intestine
45	chr8:126226800-126230000	Weak transcription	Fetal Intestine Small	intestine
46	chr8:126226800-126230000	Weak transcription	Placenta	Placenta
47	chr8:126226800-126230000	Weak transcription	Hela-S3	cervix
48	chr8:126226800-126230400	Weak transcription	Stomach Mucosa	stomach
49	chr8:126226800-126230800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr8:126226800-126230800	Weak transcription	Osteobl	bone

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