Variant report

Variant	rs10107163
Chromosome Location	chr8:121059554-121059555
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10087490	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10095170	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102329	0.83[AMR][1000 genomes]
rs10109973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112515	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10113201	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955950	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893482	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893500	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893505	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28390204	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871829	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988923	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6992102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6996253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998748	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7011381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016443	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017084	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675721	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675732	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675734	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675747	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7819380	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7841443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121017000-121067000	Weak transcription	Brain Anterior Caudate	brain
2	chr8:121022400-121065400	Weak transcription	Left Ventricle	heart
3	chr8:121036000-121063800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:121038400-121061800	Weak transcription	Adipose Nuclei	Adipose
5	chr8:121042000-121063400	Weak transcription	Spleen	Spleen
6	chr8:121046200-121065200	Weak transcription	Psoas Muscle	Psoas
7	chr8:121048600-121061800	Weak transcription	Fetal Intestine Large	intestine
8	chr8:121048600-121061800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr8:121048800-121063600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:121048800-121063600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:121049200-121062200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr8:121049200-121072800	Weak transcription	Fetal Lung	lung
13	chr8:121049200-121072800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:121050200-121060200	Weak transcription	Fetal Kidney	kidney
15	chr8:121052800-121060000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr8:121053400-121060400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:121053600-121064000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr8:121053600-121067200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr8:121053600-121072800	Weak transcription	Brain Angular Gyrus	brain
20	chr8:121053600-121072800	Weak transcription	Brain Substantia Nigra	brain
21	chr8:121053600-121072800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:121053800-121060000	Weak transcription	Ovary	ovary
23	chr8:121053800-121072800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr8:121054600-121061800	Weak transcription	Brain Hippocampus Middle	brain
25	chr8:121054600-121061800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr8:121055200-121060800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:121056000-121060200	Weak transcription	Colon Smooth Muscle	Colon
28	chr8:121056000-121060400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr8:121057000-121060200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr8:121057000-121060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr8:121057200-121060200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr8:121057400-121060200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr8:121057400-121061800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr8:121057600-121060000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr8:121057600-121060200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr8:121057600-121060200	Weak transcription	Osteobl	bone
37	chr8:121057600-121060400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr8:121057800-121059600	Strong transcription	Fetal Intestine Small	intestine
39	chr8:121057800-121060400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr8:121058200-121059800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:121058400-121060200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr8:121058400-121060200	Weak transcription	Liver	Liver
43	chr8:121058400-121060200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr8:121058400-121060200	Weak transcription	Fetal Muscle Leg	muscle
45	chr8:121058400-121065400	Weak transcription	Pancreas	Pancrea
46	chr8:121058400-121066200	Weak transcription	Gastric	stomach
47	chr8:121058600-121061600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr8:121059200-121060000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr8:121059200-121060400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr8:121059200-121060600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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