Variant report

Variant	rs10108093
Chromosome Location	chr8:34763375-34763376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28451570	1.00[AFR][1000 genomes]
rs28483125	1.00[AFR][1000 genomes]
rs28545335	1.00[AFR][1000 genomes]
rs28602587	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693375	chr8:34631970-34780509	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv972208	chr8:34644254-34790092	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv890716	chr8:34707436-34822797	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34757200-34763400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:34757400-34763400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:34762200-34766400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:34762400-34766800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:34762600-34763800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:34762600-34763800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:34762600-34764800	Enhancers	HMEC	breast
8	chr8:34762800-34763400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:34762800-34764000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:34763200-34763800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:34763200-34764200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr8:34763200-34765400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr8:34763200-34766200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr8:34763200-34768000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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