Variant report

Variant	rs10109140
Chromosome Location	chr8:118615923-118615924
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10093803	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10105834	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991406	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11992669	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11996174	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1351356	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1480164	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1993980	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28448285	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28473319	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986953	0.85[AFR][1000 genomes]
rs732095	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7840522	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9297567	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1028387	chr8:118602105-118640162	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118613000-118616200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr8:118613800-118616000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:118614200-118616200	Enhancers	HSMM	muscle
4	chr8:118614200-118616400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:118614600-118616000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:118614600-118616000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:118614600-118616200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:118614600-118616200	Enhancers	Ovary	ovary
9	chr8:118614600-118616200	Enhancers	HSMMtube	muscle
10	chr8:118615400-118620800	Weak transcription	Hela-S3	cervix
11	chr8:118615600-118616000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:118615600-118616000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:118615600-118616200	Enhancers	HUVEC	blood vessel
14	chr8:118615600-118616600	Enhancers	Osteobl	bone
15	chr8:118615600-118619600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:118615600-118620400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:118615600-118620800	Weak transcription	HMEC	breast
18	chr8:118615800-118616000	Enhancers	Aorta	Aorta
19	chr8:118615800-118616200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:118615800-118616200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:118615800-118616200	Enhancers	NHLF	lung
22	chr8:118615800-118617200	Weak transcription	NHDF-Ad	bronchial
23	chr8:118615800-118620800	Weak transcription	NH-A	brain
24	chr8:118615800-118621000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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