Variant report

Variant	rs10109617
Chromosome Location	chr8:9913977-9913978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr8:9913864-9914048	MCF10A-Er-Src	breast:	n/a	n/a
2	GATA3	chr8:9913921-9914121	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9912450..9914254-chr8:9914390..9916277,2	MCF-7	breast:

Variant related genes	Relation type
MSRA	TF binding region
ENSG00000260093	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10081447	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10101206	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2293090	0.89[ASN][1000 genomes]
rs28560439	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv869934	chr8:9806639-9940586	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv890343	chr8:9888729-9932797	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9913000-9933400	Weak transcription	Gastric	stomach
2	chr8:9913200-9914200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:9913200-9914600	Weak transcription	Left Ventricle	heart
4	chr8:9913200-9915600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:9913200-9916200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:9913200-9919200	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:9913200-9919400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:9913200-9919400	Weak transcription	Lung	lung
9	chr8:9913200-9919400	Weak transcription	Spleen	Spleen
10	chr8:9913200-9921000	Weak transcription	Fetal Stomach	stomach
11	chr8:9913200-9922000	Weak transcription	Esophagus	oesophagus
12	chr8:9913200-9926600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:9913200-9927600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr8:9913200-9929200	Weak transcription	Aorta	Aorta
15	chr8:9913200-9933600	Weak transcription	Pancreas	Pancrea
16	chr8:9913200-9944800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:9913400-9914000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr8:9913400-9914000	Enhancers	Primary T cells from cord blood	blood
19	chr8:9913400-9914000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr8:9913400-9914000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr8:9913400-9914400	Weak transcription	Liver	Liver
22	chr8:9913400-9915400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr8:9913400-9915400	Weak transcription	Fetal Intestine Large	intestine
24	chr8:9913400-9915800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr8:9913400-9917000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:9913400-9918400	Weak transcription	Fetal Brain Female	brain
27	chr8:9913400-9921200	Weak transcription	Adipose Nuclei	Adipose
28	chr8:9913400-9928000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr8:9913400-9930600	Weak transcription	Fetal Intestine Small	intestine
30	chr8:9913400-9935800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:9913600-9914000	Enhancers	Primary B cells from cord blood	blood
32	chr8:9913600-9915200	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr8:9913600-9920400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr8:9913600-9938600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr8:9913800-9914200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:9913800-9917000	Weak transcription	Fetal Brain Male	brain
37	chr8:9913800-9922600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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