Variant report

Variant	rs10109649
Chromosome Location	chr8:115654266-115654267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:115648075..115653566-chr8:115653938..115656968,8	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10099035	0.87[EUR][1000 genomes]
rs1378170	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16886162	1.00[EUR][1000 genomes]
rs16886216	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16886342	0.87[EUR][1000 genomes]
rs16886417	1.00[CEU][hapmap]
rs1995070	1.00[EUR][1000 genomes]
rs28405760	0.87[EUR][1000 genomes]
rs55844108	0.87[EUR][1000 genomes]
rs55968212	1.00[EUR][1000 genomes]
rs57749487	1.00[EUR][1000 genomes]
rs60355973	0.87[EUR][1000 genomes]
rs7844837	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611976	chr8:115261134-116223865	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1018280	chr8:115307838-116189192	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv539726	chr8:115307838-116189192	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv891372	chr8:115351857-116037119	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv891373	chr8:115351857-116295809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv891377	chr8:115395451-116110725	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv1851831	chr8:115430637-115656140	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1844991	chr8:115450682-115723577	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv438078	chr8:115584106-115654884	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv508524	chr8:115600528-115657841	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1035026	chr8:115601763-115654756	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv891388	chr8:115603659-115674664	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv891389	chr8:115603659-115695166	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv1028342	chr8:115611957-115656200	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv539729	chr8:115611957-115656200	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv6356	chr8:115618019-115668538	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv891390	chr8:115626102-115732418	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	esv2764094	chr8:115631294-115654768	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv2761212	chr8:115631294-115665386	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv891392	chr8:115632043-115664782	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv891393	chr8:115632043-115674664	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv1825385	chr8:115633726-115656140	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv1830291	chr8:115633861-115656140	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv1846941	chr8:115633861-115656140	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv1828350	chr8:115633861-115755669	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	nsv1034693	chr8:115634475-115654756	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv1026654	chr8:115634475-115662769	Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	nsv1033093	chr8:115634475-115665374	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	nsv1020887	chr8:115634475-115672948	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	esv3584891	chr8:115634487-115654768	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv1017275	chr8:115634542-115654756	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv1030428	chr8:115634641-115654756	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv1025692	chr8:115634895-115654756	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv1024684	chr8:115634895-115665374	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
35	nsv1031907	chr8:115635108-115654756	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv1021379	chr8:115635282-115654756	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv1033920	chr8:115635282-115665374	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
38	nsv1029697	chr8:115635674-115662769	Weak transcription Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
39	nsv1019087	chr8:115638338-115662769	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
40	nsv1018871	chr8:115638689-115654756	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
41	esv1830271	chr8:115639646-115690651	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
42	nsv891394	chr8:115642536-115889749	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
43	nsv891395	chr8:115642536-116222842	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:115653600-115654600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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