Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10107717	0.83[ASN][1000 genomes]
rs10108024	0.88[ASN][1000 genomes]
rs1551269	0.85[ASN][1000 genomes]
rs1621663	0.85[ASN][1000 genomes]
rs1670379	0.89[ASN][1000 genomes]
rs1670387	0.85[ASN][1000 genomes]
rs1670389	0.89[ASN][1000 genomes]
rs1670393	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1670403	0.85[ASN][1000 genomes]
rs1789967	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1789973	0.85[ASN][1000 genomes]
rs1789975	0.89[ASN][1000 genomes]
rs1789976	0.89[ASN][1000 genomes]
rs1789978	0.89[ASN][1000 genomes]
rs1789980	0.85[ASN][1000 genomes]
rs1954749	0.85[ASN][1000 genomes]
rs2154668	0.89[ASN][1000 genomes]
rs2186398	0.89[ASN][1000 genomes]
rs2444313	0.85[ASN][1000 genomes]
rs2510813	0.89[ASN][1000 genomes]
rs2602293	0.89[ASN][1000 genomes]
rs2844278	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4335109	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4335110	0.89[ASN][1000 genomes]
rs4734912	0.92[ASN][1000 genomes]
rs7015711	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1795740	chr8:107406143-107417676	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10110526	APP	trans	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107362400-107427000	Weak transcription	Aorta	Aorta
2	chr8:107404400-107447000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107411000-107419000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:107411000-107419200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:107411200-107414600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:107411200-107426400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:107411400-107414200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:107411400-107427000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:107411600-107412600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:107411600-107414600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:107411600-107439200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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