Variant report

Variant	rs10111010
Chromosome Location	chr8:62411161-62411162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:62408687..62410357-chr8:62411141..62412784,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10101416	0.82[ASN][1000 genomes]
rs10106575	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10106775	0.83[ASN][1000 genomes]
rs10109999	0.82[ASN][1000 genomes]
rs10113272	0.82[ASN][1000 genomes]
rs11984530	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1532255	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16918881	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16927470	0.82[ASN][1000 genomes]
rs16927479	0.82[ASN][1000 genomes]
rs1968990	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2087900	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2101707	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2452688	0.89[EUR][1000 genomes]
rs2610522	0.88[ASN][1000 genomes]
rs2640235	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2640239	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2640241	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34344679	0.82[ASN][1000 genomes]
rs3922836	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4416815	0.84[ASN][1000 genomes]
rs4510853	0.82[ASN][1000 genomes]
rs4537294	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4737587	0.82[ASN][1000 genomes]
rs61397046	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67210846	0.82[ASN][1000 genomes]
rs6992187	0.83[ASN][1000 genomes]
rs7005455	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7011243	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7013189	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7825172	0.82[ASN][1000 genomes]
rs903027	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1027742	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv539633	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1021377	chr8:62214279-62596721	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv539634	chr8:62214279-62596721	ZNF genes & repeats Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1029046	chr8:62224341-62535277	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv521898	chr8:62364663-62419120	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62400600-62412000	Weak transcription	A549	lung
2	chr8:62406200-62415400	Weak transcription	Esophagus	oesophagus
3	chr8:62408600-62427800	Weak transcription	Fetal Intestine Large	intestine
4	chr8:62408600-62430800	Weak transcription	Fetal Brain Male	brain
5	chr8:62408800-62412600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:62408800-62412600	Weak transcription	Fetal Brain Female	brain
7	chr8:62408800-62427600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:62408800-62432000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr8:62409000-62415600	Weak transcription	Aorta	Aorta
10	chr8:62409000-62427800	Weak transcription	HMEC	breast
11	chr8:62409200-62415400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:62409200-62426000	Weak transcription	Fetal Intestine Small	intestine
13	chr8:62409400-62412600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:62409400-62421200	Weak transcription	Brain Anterior Caudate	brain
15	chr8:62409600-62412600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:62409800-62412000	Weak transcription	NHDF-Ad	bronchial
17	chr8:62410200-62412000	Weak transcription	Adipose Nuclei	Adipose
18	chr8:62410400-62412600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:62410400-62415600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr8:62410400-62417600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:62410600-62420400	Weak transcription	Gastric	stomach
22	chr8:62410800-62412400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr8:62410800-62414800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:62410800-62414800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:62410800-62415000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr8:62410800-62415600	Weak transcription	Liver	Liver
27	chr8:62411000-62414800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:62411000-62505800	Weak transcription	Brain Angular Gyrus	brain

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