Variant report

Variant	rs10112559
Chromosome Location	chr8:8654181-8654182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13282015	0.81[AMR][1000 genomes]
rs2409090	0.85[AMR][1000 genomes]
rs3748144	0.81[AMR][1000 genomes]
rs4841041	0.84[AMR][1000 genomes]
rs6601732	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1033463	chr8:8221922-8674333	Weak transcription Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv539451	chr8:8221922-8674333	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1019606	chr8:8353661-8736992	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv539456	chr8:8353661-8736992	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv995047	chr8:8353662-8857913	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv1022511	chr8:8493992-8737132	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv539457	chr8:8493992-8737132	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	esv1795023	chr8:8583943-8655580	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
10	esv1825234	chr8:8583943-8655580	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
11	esv1824870	chr8:8583943-8699382	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
12	nsv610189	chr8:8590437-8664940	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
13	nsv831228	chr8:8608387-8790790	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv1018828	chr8:8609880-8790660	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	nsv1022331	chr8:8610035-8787981	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
16	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10112559	RP11-62H7.2	cis	Thyroid	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8637600-8679800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:8640200-8655600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:8640600-8654800	Weak transcription	Colonic Mucosa	Colon
4	chr8:8642800-8660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:8644200-8655600	Weak transcription	Fetal Brain Male	brain
6	chr8:8645000-8655000	Weak transcription	Brain Angular Gyrus	brain
7	chr8:8646600-8654600	Weak transcription	Brain Hippocampus Middle	brain
8	chr8:8646600-8654800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:8646600-8655000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr8:8646600-8655000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:8646600-8658000	Weak transcription	Pancreas	Pancrea
12	chr8:8647000-8654800	Weak transcription	Right Atrium	heart
13	chr8:8647200-8654800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr8:8647400-8654800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:8647600-8654400	Weak transcription	GM12878-XiMat	blood
16	chr8:8648600-8654400	Weak transcription	Primary B cells from cord blood	blood
17	chr8:8648600-8658000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:8649000-8654800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr8:8649200-8654800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr8:8649200-8654800	Weak transcription	Small Intestine	intestine
21	chr8:8649200-8655000	Weak transcription	HSMM	muscle
22	chr8:8649200-8657200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr8:8649200-8657200	Weak transcription	Colon Smooth Muscle	Colon
24	chr8:8649200-8657800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:8649200-8666400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr8:8649400-8654400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr8:8649400-8654400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr8:8649400-8654800	Weak transcription	Brain Substantia Nigra	brain
29	chr8:8649400-8657800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr8:8649400-8661800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr8:8649400-8663600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr8:8649400-8663800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr8:8649600-8654800	Weak transcription	Spleen	Spleen
34	chr8:8649600-8657800	Weak transcription	Stomach Mucosa	stomach
35	chr8:8650200-8655000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr8:8650600-8656000	Strong transcription	Dnd41	blood
37	chr8:8650800-8663400	Weak transcription	Hela-S3	cervix
38	chr8:8651000-8654600	Weak transcription	HUVEC	blood vessel
39	chr8:8651000-8655200	Strong transcription	Fetal Stomach	stomach
40	chr8:8651000-8655400	Strong transcription	Fetal Intestine Small	intestine
41	chr8:8651200-8654800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr8:8651200-8655000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr8:8651200-8655000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr8:8651200-8656200	Weak transcription	Esophagus	oesophagus
45	chr8:8651200-8657800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr8:8651400-8654600	Weak transcription	NH-A	brain
47	chr8:8651400-8655000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr8:8651400-8655200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr8:8651600-8658000	Weak transcription	Aorta	Aorta
50	chr8:8651800-8655200	Strong transcription	HUES64 Cell Line	embryonic stem cell

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