Variant report

Variant	rs10112573
Chromosome Location	chr8:78030752-78030753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10738141	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675877	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681351	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681823	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268637	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16939428	0.84[AFR][1000 genomes]
rs17377271	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17378900	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982433	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988420	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017237	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1020007	chr8:78021376-78059834	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78030000-78031800	Enhancers	Osteobl	bone
2	chr8:78030000-78033000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:78030000-78033000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:78030200-78030800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:78030200-78031000	Enhancers	Colon Smooth Muscle	Colon
6	chr8:78030200-78031000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr8:78030200-78031200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr8:78030200-78032800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:78030200-78033200	Enhancers	NHEK	skin
10	chr8:78030400-78030800	Enhancers	HSMM	muscle
11	chr8:78030400-78031400	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:78030400-78031800	Enhancers	GM12878-XiMat	blood
13	chr8:78030400-78032800	Enhancers	Hela-S3	cervix
14	chr8:78030600-78030800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:78030600-78030800	Enhancers	NH-A	brain
16	chr8:78030600-78031000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:78030600-78031000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:78030600-78031000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:78030600-78031200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr8:78030600-78031800	Flanking Active TSS	HUVEC	blood vessel
21	chr8:78030600-78032800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:78030600-78032800	Enhancers	HSMMtube	muscle
23	chr8:78030600-78033000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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