Variant report

Variant	rs10113282
Chromosome Location	chr8:96038252-96038253
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96035216..96038805-chr8:96144544..96148215,5	MCF-7	breast:
2	chr8:96029323..96031778-chr8:96037599..96040079,2	K562	blood:
3	chr8:95906811..95910746-chr8:96036982..96038663,3	K562	blood:
4	chr8:95956652..95964127-chr8:96035798..96039465,14	MCF-7	breast:
5	chr6:151710576..151712846-chr8:96037151..96040078,2	MCF-7	breast:
6	chr8:96037199..96039610-chr8:96084206..96086584,2	K562	blood:
7	chr8:96036158..96039259-chr8:96045836..96048453,3	MCF-7	breast:
8	chr17:27738897..27740398-chr8:96037413..96039702,2	MCF-7	breast:
9	chr8:96037342..96039267-chr8:96086128..96088306,2	MCF-7	breast:
10	chr8:95959680..95964310-chr8:96036583..96039456,6	MCF-7	breast:
11	chr8:95915511..95918504-chr8:96036526..96038312,2	MCF-7	breast:
12	chr8:96037704..96039213-chr8:96145845..96147628,2	K562	blood:
13	chr8:95835209..95837028-chr8:96037260..96039348,2	MCF-7	breast:
14	chr8:95906811..95909706-chr8:96035495..96039299,4	K562	blood:
15	chr8:95906302..95910709-chr8:96035472..96039639,10	MCF-7	breast:
16	chr8:95905055..95911257-chr8:96032486..96039313,18	MCF-7	breast:
17	chr8:95565366..95567177-chr8:96036825..96038672,2	K562	blood:
18	chr8:95959784..95963292-chr8:96036254..96039616,3	K562	blood:
19	chr8:96037608..96039540-chr8:96126841..96128401,2	K562	blood:
20	chr8:96033508..96040236-chr8:96084539..96089897,8	MCF-7	breast:
21	chr8:96037496..96040138-chr8:96124938..96127918,2	MCF-7	breast:
22	chr8:95835151..95838228-chr8:96036599..96039705,3	K562	blood:
23	chr17:59485283..59487491-chr8:96036990..96038836,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000245080	Chromatin interaction
ENSG00000181472	Chromatin interaction
ENSG00000253704	Chromatin interaction
ENSG00000175305	Chromatin interaction
ENSG00000175895	Chromatin interaction
ENSG00000164944	Chromatin interaction
ENSG00000253878	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000164941	Chromatin interaction
ENSG00000238791	Chromatin interaction
ENSG00000156170	Chromatin interaction
ENSG00000164938	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3019173	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734295	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7812465	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7818382	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96036400-96038400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr8:96036600-96038400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr8:96036600-96038400	Active TSS	HSMM	muscle
4	chr8:96036600-96038400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr8:96036600-96038600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:96036600-96038800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:96036800-96038400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:96036800-96038600	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr8:96036800-96038800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:96037000-96038400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:96037000-96038400	Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr8:96037000-96038600	Active TSS	A549	lung
13	chr8:96037000-96038600	Active TSS	K562	blood
14	chr8:96037200-96038400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr8:96037200-96038400	Active TSS	HMEC	breast
16	chr8:96037400-96038400	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr8:96037400-96038400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:96037400-96038400	Flanking Active TSS	Fetal Muscle Leg	muscle
19	chr8:96037600-96038400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr8:96037600-96038400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:96037600-96038400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr8:96037600-96038400	Flanking Active TSS	Brain Angular Gyrus	brain
23	chr8:96037600-96038400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr8:96037600-96038400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr8:96037600-96038600	Flanking Active TSS	Liver	Liver
26	chr8:96037600-96038800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr8:96037800-96038400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr8:96037800-96038400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr8:96037800-96038400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr8:96037800-96038400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr8:96037800-96038400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr8:96037800-96038400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:96037800-96038400	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr8:96037800-96038400	Flanking Active TSS	Colon Smooth Muscle	Colon
35	chr8:96037800-96038400	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr8:96037800-96038400	Flanking Active TSS	Fetal Brain Female	brain
37	chr8:96037800-96038400	Flanking Active TSS	Fetal Thymus	thymus
38	chr8:96037800-96038400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
39	chr8:96037800-96038400	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr8:96037800-96038400	Flanking Active TSS	HUVEC	blood vessel
41	chr8:96037800-96038400	Flanking Active TSS	NH-A	brain
42	chr8:96037800-96038400	Flanking Active TSS	NHEK	skin
43	chr8:96037800-96038600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr8:96037800-96038600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr8:96037800-96038800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr8:96037800-96039200	Flanking Active TSS	Dnd41	blood
47	chr8:96037800-96070200	Weak transcription	Aorta	Aorta
48	chr8:96038000-96038400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
49	chr8:96038000-96038400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:96038000-96038400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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