Variant report

Variant	rs10113467
Chromosome Location	chr8:106746737-106746738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10091488	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305056	0.80[AFR][1000 genomes]
rs7836294	0.90[AFR][1000 genomes]
rs7836300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv891260	chr8:106737459-106808078	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106742800-106760000	Weak transcription	Left Ventricle	heart
2	chr8:106743400-106755600	Weak transcription	Right Ventricle	heart
3	chr8:106743600-106768400	Weak transcription	Psoas Muscle	Psoas
4	chr8:106743800-106753200	Weak transcription	Aorta	Aorta
5	chr8:106743800-106755400	Weak transcription	Ovary	ovary
6	chr8:106743800-106756000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:106744000-106746800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:106744400-106755800	Weak transcription	Adipose Nuclei	Adipose
9	chr8:106744800-106751200	Weak transcription	NHLF	lung
10	chr8:106745600-106749200	Weak transcription	K562	blood
11	chr8:106745800-106747000	Enhancers	Colon Smooth Muscle	Colon
12	chr8:106745800-106747000	Enhancers	Fetal Lung	lung
13	chr8:106746000-106746800	Enhancers	Stomach Smooth Muscle	stomach
14	chr8:106746200-106746800	Enhancers	Fetal Brain Female	brain
15	chr8:106746200-106746800	Weak transcription	Fetal Heart	heart
16	chr8:106746600-106747000	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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