Variant report

Variant	rs10113493
Chromosome Location	chr8:121874639-121874640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121864308..121866677-chr8:121872620..121875288,2	MCF-7	breast:
2	chr8:121861612..121864034-chr8:121872422..121874822,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10091815	0.81[EUR][1000 genomes]
rs10109303	0.86[EUR][1000 genomes]
rs10955991	0.88[EUR][1000 genomes]
rs10955992	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12547186	0.82[EUR][1000 genomes]
rs13248499	0.85[EUR][1000 genomes]
rs2891944	0.84[CEU][hapmap]
rs4501619	0.86[EUR][1000 genomes]
rs4871137	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4871138	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4871139	0.83[EUR][1000 genomes]
rs6990876	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6996149	0.86[EUR][1000 genomes]
rs7000987	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891423	chr8:121847643-121994660	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv437632	chr8:121861465-121877076	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3479954	chr8:121872275-121874656	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv8305	chr8:121872370-121874672	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121868800-121877200	Enhancers	HepG2	liver
2	chr8:121869000-121874800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:121870200-121874800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr8:121870200-121875000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:121870400-121875000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:121872200-121875200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr8:121872400-121875000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr8:121872600-121874800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:121872800-121874800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr8:121872800-121874800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr8:121873200-121874800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:121873200-121874800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr8:121873200-121874800	Enhancers	Brain Germinal Matrix	brain
14	chr8:121873200-121874800	Enhancers	Fetal Muscle Trunk	muscle
15	chr8:121873200-121874800	Enhancers	Spleen	Spleen
16	chr8:121873200-121875000	Enhancers	Fetal Muscle Leg	muscle
17	chr8:121873400-121874800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:121873400-121874800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:121873400-121874800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr8:121873400-121874800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr8:121873400-121874800	Enhancers	Dnd41	blood
22	chr8:121873600-121874800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr8:121874000-121874800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr8:121874000-121874800	Enhancers	Primary T cells from cord blood	blood
25	chr8:121874000-121874800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr8:121874000-121874800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr8:121874200-121881000	Weak transcription	Psoas Muscle	Psoas
28	chr8:121874400-121874800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr8:121874400-121877600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr8:121874400-121880000	Weak transcription	Liver	Liver
31	chr8:121874600-121880400	Weak transcription	Osteobl	bone
32	chr8:121874600-121880600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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