Variant report

Variant	rs10113907
Chromosome Location	chr9:100624748-100624749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100619175..100621925-chr9:100624139..100627052,3	K562	blood:
2	chr9:100619175..100621925-chr9:100624139..100625780,2	K562	blood:
3	chr9:100622883..100625643-chr9:100642333..100644291,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10046805	0.83[AFR][1000 genomes]
rs10119795	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10818239	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11999801	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12003789	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12238579	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12341377	0.80[AFR][1000 genomes]
rs12347191	0.84[AFR][1000 genomes]
rs12348304	0.81[AFR][1000 genomes]
rs13300874	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13301569	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1443434	0.84[AFR][1000 genomes]
rs1443435	0.84[AFR][1000 genomes]
rs1561958	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1561959	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1867277	0.80[AFR][1000 genomes]
rs1867280	0.81[AFR][1000 genomes]
rs3758249	0.83[AFR][1000 genomes]
rs3758251	0.82[AFR][1000 genomes]
rs4460498	0.84[AFR][1000 genomes]
rs4743140	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6478450	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6586	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67449879	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7020644	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7033315	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7357707	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7851552	0.81[AFR][1000 genomes]
rs7853349	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7870125	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs874004	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs894673	0.83[AFR][1000 genomes]
rs907577	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10113907	C9orf156	cis	Thyroid	GTEx
rs10113907	C9orf156	cis	Esophagus Muscularis	GTEx
rs10113907	FOXE1	cis	Esophagus Mucosa	GTEx
rs10113907	C9orf156	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100620800-100625800	Weak transcription	Gastric	stomach
2	chr9:100623400-100625200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:100623400-100625400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:100623600-100624800	Weak transcription	NHEK	skin

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