Variant report

Variant	rs10114015
Chromosome Location	chr9:108174985-108174986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10121690	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12338896	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108146800-108177600	Weak transcription	Left Ventricle	heart
2	chr9:108173600-108175400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:108174200-108175400	Weak transcription	Brain Substantia Nigra	brain
4	chr9:108174200-108175600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:108174200-108175600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:108174200-108177600	Weak transcription	Fetal Heart	heart
7	chr9:108174400-108175600	Weak transcription	HepG2	liver
8	chr9:108174800-108175600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:108174800-108177800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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