Variant report

Variant	rs10114727
Chromosome Location	chr9:136731701-136731702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136726221..136733157-chr9:136853321..136860155,11	MCF-7	breast:
2	chr9:136730272..136735488-chr9:136855005..136861125,10	MCF-7	breast:
3	chr9:136647424..136648976-chr9:136729858..136732826,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10217159	1.00[EUR][1000 genomes]
rs11998957	1.00[EUR][1000 genomes]
rs12339322	1.00[EUR][1000 genomes]
rs12342989	1.00[EUR][1000 genomes]
rs12353234	1.00[EUR][1000 genomes]
rs2428122	1.00[EUR][1000 genomes]
rs7047679	0.83[AFR][1000 genomes]
rs7048686	1.00[EUR][1000 genomes]
rs73550009	1.00[EUR][1000 genomes]
rs73553983	1.00[EUR][1000 genomes]
rs73555907	1.00[EUR][1000 genomes]
rs73555909	1.00[EUR][1000 genomes]
rs73555919	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv831746	chr9:136607829-136750740	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136711400-136737800	Weak transcription	NH-A	brain
2	chr9:136721400-136738600	Weak transcription	HUVEC	blood vessel
3	chr9:136726200-136735400	Weak transcription	Aorta	Aorta
4	chr9:136726600-136735200	Weak transcription	Gastric	stomach
5	chr9:136727800-136738400	Weak transcription	HepG2	liver
6	chr9:136727800-136739000	Weak transcription	NHLF	lung
7	chr9:136729200-136734400	Weak transcription	Primary B cells from cord blood	blood
8	chr9:136729600-136731800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:136729600-136732200	ZNF genes & repeats	Fetal Stomach	stomach
10	chr9:136729600-136734800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr9:136729600-136735000	Weak transcription	Left Ventricle	heart
12	chr9:136729600-136737600	Weak transcription	HSMM	muscle
13	chr9:136729600-136780000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:136729800-136732000	Weak transcription	Liver	Liver
15	chr9:136729800-136762600	Weak transcription	Right Ventricle	heart
16	chr9:136730000-136735200	Weak transcription	Right Atrium	heart
17	chr9:136730000-136735400	Weak transcription	Spleen	Spleen
18	chr9:136730000-136736800	Weak transcription	HMEC	breast
19	chr9:136730000-136737000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:136730000-136738400	Weak transcription	Fetal Intestine Large	intestine
21	chr9:136730000-136739200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr9:136730200-136733800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:136730200-136734800	Weak transcription	Pancreas	Pancrea
24	chr9:136730600-136732000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:136730800-136738400	Weak transcription	A549	lung
26	chr9:136731000-136734800	Weak transcription	NHEK	skin
27	chr9:136731200-136732000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:136731200-136732400	Weak transcription	Fetal Lung	lung
29	chr9:136731200-136734800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr9:136731200-136737000	Weak transcription	Hela-S3	cervix
31	chr9:136731200-136738400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:136731200-136738400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:136731200-136738400	Weak transcription	Osteobl	bone
34	chr9:136731400-136732000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:136731400-136734200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:136731400-136734400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr9:136731400-136734400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr9:136731400-136734800	Weak transcription	Fetal Brain Female	brain
39	chr9:136731400-136734800	Strong transcription	Fetal Intestine Small	intestine
40	chr9:136731400-136734800	Weak transcription	Fetal Muscle Leg	muscle
41	chr9:136731400-136735000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr9:136731600-136732200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr9:136731600-136734600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr9:136731600-136734800	Weak transcription	Brain Germinal Matrix	brain
45	chr9:136731600-136735000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:136731600-136735000	Weak transcription	GM12878-XiMat	blood
47	chr9:136731600-136735200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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