Variant report

Variant	rs10115871
Chromosome Location	chr9:71365463-71365464
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:71364345..71366935-chr9:71393170..71395028,2	MCF-7	breast:
2	chr9:71365225..71367364-chr9:71393431..71395808,2	K562	blood:
3	chr9:71365153..71367262-chr9:71371019..71372554,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187866	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10781264	0.82[JPT][hapmap]
rs10869365	0.91[JPT][hapmap]
rs10869396	0.82[JPT][hapmap]
rs10869403	0.82[JPT][hapmap]
rs10869419	0.86[JPT][hapmap]
rs10869420	0.82[JPT][hapmap]
rs10869487	0.87[JPT][hapmap]
rs11144021	0.87[JPT][hapmap]
rs13284709	0.87[JPT][hapmap]
rs1414949	0.86[JPT][hapmap]
rs4237270	0.86[JPT][hapmap]
rs4745295	0.85[JPT][hapmap]
rs4745327	0.82[JPT][hapmap]
rs4745328	0.81[JPT][hapmap]
rs6560419	0.83[JPT][hapmap]
rs7031640	0.81[JPT][hapmap]
rs7033278	0.85[JPT][hapmap]
rs7043242	0.84[JPT][hapmap]
rs7851923	0.86[JPT][hapmap]
rs7864097	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs883952	0.82[JPT][hapmap]
rs944856	0.91[JPT][hapmap]
rs952589	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71351000-71370600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:71352400-71365800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:71360000-71370600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:71360200-71370600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:71362000-71365800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:71362200-71365600	Weak transcription	Gastric	stomach
7	chr9:71362200-71365800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:71362200-71370600	Weak transcription	Left Ventricle	heart
9	chr9:71362800-71366000	Enhancers	Placenta	Placenta
10	chr9:71363400-71366000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:71363800-71365600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:71363800-71366400	Enhancers	Fetal Intestine Large	intestine
13	chr9:71364000-71366200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr9:71364000-71366600	Enhancers	HepG2	liver
15	chr9:71364200-71366000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr9:71364200-71366000	Strong transcription	Primary B cells from cord blood	blood
17	chr9:71364200-71366200	Enhancers	Fetal Heart	heart
18	chr9:71364400-71366600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr9:71364600-71365600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:71364600-71365800	Enhancers	Fetal Brain Male	brain
21	chr9:71364800-71366000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr9:71364800-71366400	Enhancers	Fetal Intestine Small	intestine
23	chr9:71364800-71366600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:71364800-71366800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr9:71365000-71365600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:71365000-71366600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:71365000-71370200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr9:71365000-71372800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr9:71365200-71365600	Bivalent Enhancer	Brain Anterior Caudate	brain
30	chr9:71365200-71365600	Active TSS	Brain Germinal Matrix	brain
31	chr9:71365200-71365800	Enhancers	Brain Cingulate Gyrus	brain
32	chr9:71365200-71366000	Enhancers	Duodenum Mucosa	Duodenum
33	chr9:71365200-71366400	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr9:71365200-71366600	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr9:71365200-71366600	Enhancers	Stomach Mucosa	stomach
36	chr9:71365400-71365800	Flanking Active TSS	K562	blood
37	chr9:71365400-71366000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr9:71365400-71366000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr9:71365400-71366000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr9:71365400-71366200	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr9:71365400-71370600	Weak transcription	Right Ventricle	heart

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