Variant report

Variant	rs10116149
Chromosome Location	chr9:11033102-11033103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10114814	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10117062	0.93[AFR][1000 genomes]
rs10117099	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10117441	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10120902	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10120903	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125396	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283478	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10283481	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10733216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10738201	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10738202	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10756167	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10756170	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10809299	0.85[AFR][1000 genomes]
rs10809301	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1104513	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1104515	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1104516	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1155586	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12339336	0.81[AFR][1000 genomes]
rs1334019	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1334020	0.81[AFR][1000 genomes]
rs1413381	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1591236	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1591237	0.82[AFR][1000 genomes]
rs1981077	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7030784	0.89[AFR][1000 genomes]
rs7032881	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7856914	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7868866	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530932	chr9:10381123-11173149	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv533845	chr9:10425554-11318889	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv529475	chr9:10648009-11435662	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869473	chr9:10648009-11457399	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1023275	chr9:10681431-11191502	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv613404	chr9:10684803-11133965	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv613405	chr9:10692461-11139558	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv613407	chr9:10753219-11280652	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1021035	chr9:10755356-11281192	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv917281	chr9:10786005-11277779	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1024662	chr9:10786074-11244071	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv539999	chr9:10786074-11244071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv870170	chr9:10870385-11043550	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv892333	chr9:10957549-11091254	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1033615	chr9:10972764-11530615	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv540000	chr9:10972764-11530615	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv1015239	chr9:10992230-11246257	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv1022325	chr9:11003058-11072447	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv1024126	chr9:11010337-11102080	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv1019436	chr9:11033008-11247205	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:11032400-11033400	Enhancers	Fetal Heart	heart
2	chr9:11032600-11033400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:11032800-11033200	Active TSS	Fetal Lung	lung
4	chr9:11032800-11033400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr9:11033000-11033200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:11033000-11033400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:11033000-11033400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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