Variant report

Variant	rs10116326
Chromosome Location	chr9:94682964-94682965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94682144..94685075-chr9:94711793..94713631,2	MCF-7	breast:
2	chr9:94664745..94669992-chr9:94681267..94685780,5	K562	blood:
3	chr9:94680096..94683212-chr9:94691490..94694919,3	K562	blood:
4	chr9:94667170..94669992-chr9:94682219..94685194,2	K562	blood:
5	chr9:94679676..94683212-chr9:94692527..94694919,4	K562	blood:

Variant related genes	Relation type
ENSG00000169071	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10115684	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10820938	0.87[CEU][hapmap]
rs1406202	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2001917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866702	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94670600-94686200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:94677400-94683000	Weak transcription	K562	blood
3	chr9:94678000-94685000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:94678200-94683600	Enhancers	Colon Smooth Muscle	Colon
5	chr9:94678200-94686600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:94678800-94686200	Weak transcription	Ovary	ovary
7	chr9:94679600-94684200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:94681400-94683200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:94681400-94683800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:94681400-94691400	Weak transcription	Pancreas	Pancrea
11	chr9:94682000-94683600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:94682400-94683200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:94682400-94683800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:94682600-94683000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr9:94682600-94683000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:94682600-94683600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:94682600-94683600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
18	chr9:94682600-94683800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
19	chr9:94682600-94683800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
20	chr9:94682600-94684000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:94682600-94684600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr9:94682800-94683000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:94682800-94683000	Enhancers	Fetal Intestine Large	intestine
24	chr9:94682800-94683000	Enhancers	Rectal Smooth Muscle	rectum
25	chr9:94682800-94683000	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr9:94682800-94683200	Enhancers	Fetal Heart	heart
27	chr9:94682800-94683200	Enhancers	Fetal Kidney	kidney
28	chr9:94682800-94683400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
29	chr9:94682800-94683400	Enhancers	Colonic Mucosa	Colon
30	chr9:94682800-94683400	Enhancers	Gastric	stomach
31	chr9:94682800-94683400	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr9:94682800-94683600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr9:94682800-94683600	Enhancers	Fetal Lung	lung
34	chr9:94682800-94683600	Enhancers	Right Atrium	heart
35	chr9:94682800-94683800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
36	chr9:94682800-94684000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:94682800-94684000	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links