Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10113975	0.86[EUR][1000 genomes]
rs10114117	0.91[EUR][1000 genomes]
rs10121771	0.90[EUR][1000 genomes]
rs10123356	0.86[EUR][1000 genomes]
rs10124185	0.91[EUR][1000 genomes]
rs10961299	0.88[EUR][1000 genomes]
rs10961302	0.91[EUR][1000 genomes]
rs12171725	0.86[EUR][1000 genomes]
rs12335400	0.86[EUR][1000 genomes]
rs12349345	0.86[EUR][1000 genomes]
rs12349396	0.86[EUR][1000 genomes]
rs12352669	0.86[EUR][1000 genomes]
rs17191861	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[MEX][hapmap];0.91[EUR][1000 genomes]
rs17224436	0.86[EUR][1000 genomes]
rs17224925	0.89[EUR][1000 genomes]
rs28400408	0.86[EUR][1000 genomes]
rs7032721	0.91[EUR][1000 genomes]
rs7032794	0.91[EUR][1000 genomes]
rs7033235	0.91[EUR][1000 genomes]
rs7048311	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10117199	SNAPC3	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13916000-13932800	Weak transcription	Psoas Muscle	Psoas
2	chr9:13916400-13920400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:13919200-13919800	Enhancers	Aorta	Aorta
4	chr9:13919200-13920000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search: