Variant report

Variant	rs10117322
Chromosome Location	chr9:14805640-14805641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7038096	0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7045154	1.00[CEU][hapmap]
rs72614222	0.86[ASN][1000 genomes]
rs72614223	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2761502	chr9:14757877-14827373	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1030626	chr9:14786215-14853681	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv540071	chr9:14786215-14853681	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv892617	chr9:14791348-14889834	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv613646	chr9:14800779-14852141	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1031440	chr9:14805107-14859190	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv540072	chr9:14805107-14859190	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14745000-14809800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:14755800-14812400	Weak transcription	Pancreas	Pancrea
3	chr9:14764800-14809600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:14768600-14808800	Weak transcription	Fetal Intestine Small	intestine
5	chr9:14779800-14853200	Weak transcription	Placenta	Placenta
6	chr9:14780400-14843200	Weak transcription	Fetal Heart	heart
7	chr9:14782000-14822000	Weak transcription	Fetal Brain Male	brain
8	chr9:14782800-14822000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:14786800-14814400	Strong transcription	Fetal Lung	lung
10	chr9:14788400-14806800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:14789400-14809200	Weak transcription	Fetal Intestine Large	intestine
12	chr9:14793000-14822600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:14794000-14806400	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:14796800-14811800	Weak transcription	Aorta	Aorta
15	chr9:14799400-14812200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr9:14801800-14811800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:14801800-14811800	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:14801800-14812600	Weak transcription	Fetal Stomach	stomach
19	chr9:14801800-14857200	Strong transcription	HepG2	liver
20	chr9:14802000-14806400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:14802400-14806800	Weak transcription	Adipose Nuclei	Adipose
22	chr9:14802800-14809600	Strong transcription	Fetal Kidney	kidney
23	chr9:14803600-14818000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr9:14804400-14807200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:14805000-14806200	Strong transcription	Duodenum Mucosa	Duodenum
26	chr9:14805200-14806600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:14805600-14810200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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