Variant report

Variant	rs10117335
Chromosome Location	chr9:95801668-95801669
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95801381..95803789-chr9:95814303..95817520,3	MCF-7	breast:
2	chr9:95798879..95801785-chr9:95811313..95813235,2	MCF-7	breast:
3	chr9:95797648..95801708-chr9:95856413..95859083,5	MCF-7	breast:
4	chr9:95793756..95796104-chr9:95801423..95803382,2	MCF-7	breast:
5	chr9:95797721..95799808-chr9:95800868..95803137,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223446	Chromatin interaction
ENSG00000165233	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13290740	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893575	chr9:95781040-95854013	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95798000-95802400	Weak transcription	Gastric	stomach
2	chr9:95798400-95801800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr9:95798800-95804200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr9:95799600-95802000	Enhancers	Primary T cells from cord blood	blood
5	chr9:95799800-95803000	Weak transcription	Spleen	Spleen
6	chr9:95799800-95804200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr9:95799800-95805200	Weak transcription	K562	blood
8	chr9:95799800-95806600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr9:95799800-95815600	Weak transcription	Thymus	Thymus
10	chr9:95800000-95801800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:95800000-95806600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr9:95800000-95809800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr9:95800200-95807800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr9:95800400-95802800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:95800400-95805200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:95800800-95802600	Weak transcription	Fetal Muscle Leg	muscle
17	chr9:95800800-95802800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr9:95800800-95803400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:95800800-95803400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr9:95800800-95803800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr9:95800800-95804800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr9:95800800-95805000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr9:95800800-95805000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:95800800-95805200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:95800800-95806000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr9:95801000-95803200	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr9:95801000-95803800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr9:95801000-95804800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr9:95801400-95801800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:95801400-95803200	Weak transcription	Placenta	Placenta
31	chr9:95801600-95801800	Enhancers	Brain Hippocampus Middle	brain
32	chr9:95801600-95804800	Weak transcription	Primary B cells from cord blood	blood

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