Variant report

Variant	rs10117920
Chromosome Location	chr9:13864265-13864266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10121157	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961291	1.00[JPT][hapmap]
rs12341611	0.80[AFR][1000 genomes]
rs1359847	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17191861	1.00[CHB][hapmap]
rs6474794	1.00[JPT][hapmap]
rs7029494	1.00[JPT][hapmap]
rs7873661	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13852000-13871000	Weak transcription	Right Ventricle	heart
2	chr9:13860200-13864400	Enhancers	Adipose Nuclei	Adipose
3	chr9:13860800-13864600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:13862000-13864400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:13862200-13865000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:13862400-13865000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:13862600-13865200	Enhancers	Fetal Stomach	stomach
8	chr9:13862800-13864400	Enhancers	Fetal Kidney	kidney
9	chr9:13863000-13864800	Enhancers	Fetal Lung	lung
10	chr9:13863400-13884200	Weak transcription	Left Ventricle	heart
11	chr9:13864000-13864400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:13864000-13864400	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr9:13864000-13864800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:13864000-13865400	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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