Variant report

Variant	rs10118295
Chromosome Location	chr9:101026643-101026644
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:101017313..101019971-chr9:101024791..101026920,2	MCF-7	breast:
2	chr9:100967700..100968256-chr9:101025763..101027217,6	MCF-7	breast:
3	chr9:100880329..100883206-chr9:101025996..101028168,2	MCF-7	breast:
4	chr9:100986971..100987476-chr9:101025923..101026674,2	K562	blood:
5	chr9:100883706..100884237-chr9:101026117..101026650,2	MCF-7	breast:
6	chr9:100967687..100968926-chr9:101025676..101026669,6	K562	blood:
7	chr9:101010177..101013807-chr9:101023006..101027119,4	K562	blood:
8	chr9:100883535..100884316-chr9:101026156..101026800,2	MCF-7	breast:
9	chr9:100684316..100685157-chr9:101025719..101026655,2	NB4	blood:
10	chr9:100944487..100947115-chr9:101025463..101028083,2	MCF-7	breast:
11	chr9:100967704..100968857-chr9:101025808..101026669,3	MCF-7	breast:
12	chr9:100685496..100686599-chr9:101025791..101026677,7	MCF-7	breast:
13	chr9:101017245..101019908-chr9:101024974..101027737,3	MCF-7	breast:
14	chr9:100987674..100988367-chr9:101026116..101026659,2	MCF-7	breast:
15	chr9:100685710..100686367-chr9:101025985..101026665,3	K562	blood:
16	chr9:101022063..101024175-chr9:101026064..101028233,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000095383	Chromatin interaction
ENSG00000106785	Chromatin interaction
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10120564	0.94[ASN][1000 genomes]
rs10739615	0.93[ASN][1000 genomes]
rs10760233	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10760243	0.95[ASN][1000 genomes]
rs10818696	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10818699	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985664	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10985671	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2117608	0.90[ASN][1000 genomes]
rs4742723	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4742724	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743195	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743196	0.91[ASN][1000 genomes]
rs55705027	0.94[ASN][1000 genomes]
rs58161463	0.82[ASN][1000 genomes]
rs59287552	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60401554	0.93[ASN][1000 genomes]
rs62574279	0.93[ASN][1000 genomes]
rs62574292	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs748387	0.90[ASN][1000 genomes]
rs7847065	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9776328	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101019600-101027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:101024800-101027600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:101025400-101028400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:101025600-101027000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:101025800-101026800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr9:101026200-101027800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:101026400-101027400	Weak transcription	K562	blood
8	chr9:101026400-101028400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:101026400-101036000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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