Variant report

Variant	rs10118898
Chromosome Location	chr9:18861581-18861582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12003140	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12003182	0.88[AFR][1000 genomes]
rs12003678	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs3739485	0.85[YRI][hapmap]
rs945443	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892698	chr9:18830444-18905289	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18827200-18861600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:18845800-18861800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:18858000-18862000	Weak transcription	HUVEC	blood vessel
4	chr9:18858400-18861600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:18858400-18861600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:18858800-18862600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:18858800-18862600	Weak transcription	NHLF	lung
8	chr9:18858800-18876600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:18859400-18861600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:18860600-18861600	Weak transcription	Fetal Brain Male	brain
11	chr9:18860600-18863200	Enhancers	Fetal Heart	heart
12	chr9:18860800-18861600	Strong transcription	HSMM	muscle
13	chr9:18860800-18862200	Enhancers	Osteobl	bone
14	chr9:18860800-18864800	Enhancers	Fetal Lung	lung
15	chr9:18860800-18864800	Enhancers	Fetal Stomach	stomach
16	chr9:18861000-18861600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:18861200-18861600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:18861200-18861600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:18861200-18861600	Enhancers	Aorta	Aorta
20	chr9:18861200-18861600	Enhancers	Colon Smooth Muscle	Colon
21	chr9:18861200-18861600	Enhancers	NHDF-Ad	bronchial
22	chr9:18861200-18862200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr9:18861200-18862400	Enhancers	Left Ventricle	heart
24	chr9:18861200-18862400	Enhancers	Ovary	ovary
25	chr9:18861200-18862400	Enhancers	Rectal Smooth Muscle	rectum
26	chr9:18861200-18862400	Enhancers	Right Atrium	heart
27	chr9:18861200-18862400	Enhancers	Right Ventricle	heart
28	chr9:18861200-18862600	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr9:18861200-18862600	Enhancers	HSMMtube	muscle
30	chr9:18861200-18862800	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr9:18861200-18862800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr9:18861200-18865000	Enhancers	Fetal Muscle Leg	muscle
33	chr9:18861400-18861800	Enhancers	Adipose Nuclei	Adipose
34	chr9:18861400-18861800	Enhancers	NH-A	brain
35	chr9:18861400-18862200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:18861400-18862400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:18861400-18862600	Enhancers	Fetal Kidney	kidney

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