Variant report

Variant	rs10119882
Chromosome Location	chr9:79259447-79259448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:79073732..79077462-chr9:79257559..79261400,5	MCF-7	breast:
2	chr9:79073274..79075649-chr9:79258050..79260128,2	MCF-7	breast:
3	chr9:79250498..79252531-chr9:79257665..79259621,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187210	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10117779	0.88[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17062827	1.00[AMR][1000 genomes]
rs7852547	0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79225400-79265600	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:79232800-79261400	Weak transcription	Colonic Mucosa	Colon
3	chr9:79234400-79259600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:79238600-79261200	Strong transcription	HSMM	muscle
5	chr9:79240000-79260800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:79241000-79260800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:79244600-79260200	Strong transcription	HSMMtube	muscle
8	chr9:79249600-79260000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:79249600-79261000	Weak transcription	NH-A	brain
10	chr9:79249600-79265400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:79249600-79265600	Weak transcription	NHDF-Ad	bronchial
12	chr9:79249600-79265600	Weak transcription	NHLF	lung
13	chr9:79252000-79261200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:79252600-79278000	Weak transcription	Gastric	stomach
15	chr9:79253200-79259800	Weak transcription	Small Intestine	intestine
16	chr9:79254000-79263000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:79254400-79260200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:79255000-79259800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:79255400-79260000	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr9:79255800-79265800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr9:79256600-79259600	Strong transcription	Aorta	Aorta
22	chr9:79256600-79260000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr9:79257000-79259800	Enhancers	Primary B cells from peripheral blood	blood
24	chr9:79257000-79259800	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr9:79257000-79259800	Strong transcription	Brain Hippocampus Middle	brain
26	chr9:79257000-79260000	Strong transcription	Brain Cingulate Gyrus	brain
27	chr9:79257200-79259800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:79257400-79259600	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr9:79257400-79260200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:79257600-79259800	Enhancers	Primary B cells from cord blood	blood
31	chr9:79257800-79260000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr9:79257800-79261200	Weak transcription	Osteobl	bone
33	chr9:79258000-79260000	Strong transcription	Colon Smooth Muscle	Colon
34	chr9:79258000-79261600	Strong transcription	Stomach Smooth Muscle	stomach
35	chr9:79258000-79262600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr9:79258000-79265600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:79258000-79270000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr9:79258200-79259800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:79258200-79261000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr9:79258200-79265600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr9:79258200-79265600	Weak transcription	Adipose Nuclei	Adipose
42	chr9:79258200-79265800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr9:79258200-79267800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:79258400-79260200	Enhancers	H9 Cell Line	embryonic stem cell
45	chr9:79258400-79261000	Weak transcription	HUVEC	blood vessel
46	chr9:79258800-79259600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr9:79258800-79259600	Weak transcription	Brain Angular Gyrus	brain
48	chr9:79258800-79260200	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr9:79259000-79259800	Enhancers	Stomach Mucosa	stomach
50	chr9:79259000-79259800	Enhancers	Monocytes-CD14+_RO01746	blood

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