Variant report

Variant	rs1011989
Chromosome Location	chr2:188222928-188222929
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13431269	0.92[ASN][1000 genomes]
rs1398058	0.89[ASN][1000 genomes]
rs1706287	0.94[ASN][1000 genomes]
rs56295242	0.92[ASN][1000 genomes]
rs60980181	0.84[ASN][1000 genomes]
rs696573	0.91[ASN][1000 genomes]
rs696574	0.91[ASN][1000 genomes]
rs698578	0.91[ASN][1000 genomes]
rs698580	0.91[ASN][1000 genomes]
rs698581	0.89[ASN][1000 genomes]
rs840617	0.91[ASN][1000 genomes]
rs858745	0.94[ASN][1000 genomes]
rs858747	0.94[ASN][1000 genomes]
rs858748	0.94[ASN][1000 genomes]
rs858749	0.94[ASN][1000 genomes]
rs858750	0.94[ASN][1000 genomes]
rs858751	0.94[ASN][1000 genomes]
rs858752	0.94[ASN][1000 genomes]
rs858754	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1003061	chr2:187950057-188282330	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000617	chr2:187950057-188290511	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv533935	chr2:188089148-188284766	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv834487	chr2:188182556-188353363	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv875557	chr2:188219052-188370232	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv875558	chr2:188219052-188388311	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv875559	chr2:188219052-188390112	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv875560	chr2:188219052-188508011	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	esv3337779	chr2:188222648-188223210	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188204000-188253600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr2:188208800-188250400	Weak transcription	Primary T cells from cord blood	blood
3	chr2:188209000-188229600	Weak transcription	Fetal Thymus	thymus
4	chr2:188209800-188233400	Weak transcription	Right Ventricle	heart
5	chr2:188210600-188223200	Weak transcription	Left Ventricle	heart
6	chr2:188210800-188248000	Weak transcription	HSMMtube	muscle
7	chr2:188214600-188250800	Weak transcription	Fetal Lung	lung
8	chr2:188214600-188257800	Weak transcription	Ovary	ovary
9	chr2:188215000-188224600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:188215600-188225200	Weak transcription	Esophagus	oesophagus
11	chr2:188216200-188229000	Weak transcription	Fetal Intestine Large	intestine
12	chr2:188219400-188225400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr2:188219600-188224200	Weak transcription	Lung	lung
14	chr2:188220200-188224400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr2:188220200-188224600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr2:188221200-188223600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:188221800-188223200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:188221800-188223600	Strong transcription	Fetal Kidney	kidney
19	chr2:188222400-188223800	Strong transcription	Fetal Muscle Leg	muscle
20	chr2:188222400-188225800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:188222600-188223000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:188222600-188223000	Strong transcription	Fetal Stomach	stomach
23	chr2:188222600-188223600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr2:188222600-188223600	Strong transcription	HUVEC	blood vessel
25	chr2:188222600-188223800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr2:188222600-188223800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:188222600-188223800	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr2:188222600-188225000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:188222600-188225800	Strong transcription	Adipose Nuclei	Adipose
30	chr2:188222800-188223800	Strong transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links