Variant report

Variant	rs10120853
Chromosome Location	chr9:108111284-108111285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108098361..108100329-chr9:108109945..108112298,2	MCF-7	breast:
2	chr9:108087480..108089779-chr9:108111023..108113317,2	K562	blood:
3	chr9:108110851..108112988-chr9:108122126..108124585,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10081709	0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10081753	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10116656	0.81[AMR][1000 genomes]
rs10820799	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10820800	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10991624	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10991628	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10991629	0.82[LWK][hapmap]
rs10991635	1.00[CEU][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11506819	0.93[ASW][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs12348983	0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs12350341	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13285648	1.00[MEX][hapmap]
rs13289885	0.81[AMR][1000 genomes]
rs16924487	0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs16924552	0.82[YRI][hapmap]
rs2417614	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34331578	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34999484	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4538947	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7019208	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs7019220	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7031117	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7034136	0.93[ASW][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes]
rs7034666	1.00[CEU][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7035065	1.00[MEX][hapmap]
rs7040751	0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs7048586	0.93[ASW][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs7860321	0.82[YRI][hapmap]
rs7863414	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7863781	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs907230	0.81[LWK][hapmap]
rs9299385	0.86[YRI][hapmap];0.81[AMR][1000 genomes]
rs9299386	0.93[ASW][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs9299387	0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs932006	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9632901	0.82[YRI][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv831678	chr9:107923522-108112813	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893689	chr9:107978563-108130606	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108055600-108151200	Weak transcription	Esophagus	oesophagus
2	chr9:108081000-108123000	Weak transcription	Primary B cells from cord blood	blood
3	chr9:108091600-108150400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:108092000-108124000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:108092000-108148000	Weak transcription	Psoas Muscle	Psoas
6	chr9:108093200-108123200	Weak transcription	Colonic Mucosa	Colon
7	chr9:108093200-108149800	Weak transcription	HUVEC	blood vessel
8	chr9:108095600-108122200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:108096200-108164200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:108096400-108131800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr9:108097000-108122800	Weak transcription	Fetal Kidney	kidney
12	chr9:108097200-108124600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr9:108097400-108133600	Weak transcription	Placenta	Placenta
14	chr9:108097600-108147000	Weak transcription	HMEC	breast
15	chr9:108099200-108122200	Weak transcription	Lung	lung
16	chr9:108099200-108123400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:108099200-108123800	Weak transcription	Aorta	Aorta
18	chr9:108099600-108122200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:108100000-108117200	Weak transcription	Fetal Lung	lung
20	chr9:108100200-108112000	Weak transcription	Primary T cells from cord blood	blood
21	chr9:108100200-108115000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr9:108100200-108123000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:108100200-108123400	Weak transcription	Fetal Stomach	stomach
24	chr9:108100200-108136200	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:108100200-108149600	Weak transcription	Pancreas	Pancrea
26	chr9:108100400-108112000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:108100400-108115800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr9:108100400-108122200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr9:108100600-108112800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr9:108100600-108123400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:108101000-108121600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr9:108101000-108122200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr9:108102000-108112000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:108102200-108111400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr9:108104800-108120200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr9:108104800-108122800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr9:108104800-108124000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr9:108104800-108124200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:108104800-108129600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr9:108104800-108147600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr9:108105000-108111400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:108105000-108112000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:108105000-108112000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr9:108105000-108112000	Weak transcription	Left Ventricle	heart
45	chr9:108105000-108122200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:108105000-108122200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr9:108105000-108122400	Weak transcription	HSMM	muscle
48	chr9:108105000-108122800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr9:108105000-108123400	Weak transcription	Adipose Nuclei	Adipose
50	chr9:108105000-108124000	Weak transcription	Fetal Intestine Small	intestine

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