Variant report

Variant	rs10121040
Chromosome Location	chr9:8687041-8687042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10046849	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10116693	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10124538	1.00[ASN][1000 genomes]
rs10481622	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10977253	1.00[AMR][1000 genomes]
rs12336641	1.00[AMR][1000 genomes]
rs12338388	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12341938	1.00[AMR][1000 genomes]
rs12344045	1.00[ASN][1000 genomes]
rs67228502	0.83[ASN][1000 genomes]
rs73427552	1.00[AMR][1000 genomes]
rs73429617	1.00[AMR][1000 genomes]
rs9886766	1.00[JPT][hapmap]
rs9886768	0.83[ASN][1000 genomes]
rs9886923	0.83[ASN][1000 genomes]
rs9969698	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892232	chr9:8645448-8698875	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892233	chr9:8645448-8702964	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892234	chr9:8645448-8703733	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8679200-8687400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:8679800-8689200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:8679800-8696400	Weak transcription	Ovary	ovary
4	chr9:8680000-8693000	Weak transcription	Fetal Brain Female	brain
5	chr9:8680000-8694800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:8681800-8687400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:8682000-8694800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:8683000-8706000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:8683400-8689200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:8683400-8696000	Weak transcription	Fetal Lung	lung
11	chr9:8683600-8693000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr9:8683800-8689400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:8684200-8689200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:8684200-8693000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:8685200-8691000	Weak transcription	Brain Angular Gyrus	brain
16	chr9:8685600-8687200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:8685600-8691000	Weak transcription	Brain Substantia Nigra	brain
18	chr9:8685800-8687600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr9:8686200-8687200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:8686200-8691000	Weak transcription	Brain Anterior Caudate	brain
21	chr9:8686400-8693600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:8686600-8691200	Weak transcription	Brain Hippocampus Middle	brain
23	chr9:8686800-8687600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:8686800-8687600	Enhancers	Osteobl	bone
25	chr9:8686800-8689000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:8687000-8687600	Enhancers	Aorta	Aorta

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