Variant report

Variant	rs10121153
Chromosome Location	chr9:101574755-101574756
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101574618..101578718-chr9:101578881..101584261,5	K562	blood:
2	chr9:101573922..101578023-chr9:101591893..101597789,5	K562	blood:
3	chr9:101570471..101572096-chr9:101573818..101575342,2	K562	blood:
4	chr9:101573972..101577031-chr9:101580194..101584196,5	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1022796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10739690	0.90[ASN][1000 genomes]
rs10760475	0.87[ASN][1000 genomes]
rs10760479	0.89[ASN][1000 genomes]
rs10760494	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10819266	0.83[ASN][1000 genomes]
rs10819308	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10819320	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10987747	0.88[EUR][1000 genomes]
rs10987749	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10987771	0.89[EUR][1000 genomes]
rs10987794	0.84[EUR][1000 genomes]
rs11791440	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12056975	0.82[EUR][1000 genomes]
rs1543506	0.89[EUR][1000 genomes]
rs1555519	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2146255	0.89[EUR][1000 genomes]
rs33998698	0.89[EUR][1000 genomes]
rs3933477	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4742737	0.89[ASN][1000 genomes]
rs4742738	0.89[ASN][1000 genomes]
rs4742741	0.92[ASN][1000 genomes]
rs4742745	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743278	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743281	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743282	0.91[ASN][1000 genomes]
rs6478839	0.87[ASN][1000 genomes]
rs6478845	0.87[ASN][1000 genomes]
rs7018907	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7020056	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7027405	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7027771	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7038640	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7047722	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7357783	0.87[ASN][1000 genomes]
rs7469116	0.90[ASN][1000 genomes]
rs7853904	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7861186	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7865233	0.92[ASN][1000 genomes]
rs9886821	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10121153	ANKS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101571000-101586600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:101571200-101577000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:101572000-101580800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr9:101572400-101575000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr9:101572400-101581200	Weak transcription	Colonic Mucosa	Colon
6	chr9:101572400-101581200	Weak transcription	Fetal Stomach	stomach
7	chr9:101572600-101585800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr9:101572600-101586600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:101572800-101580400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:101572800-101581200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:101572800-101589200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:101573000-101574800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:101573000-101580800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr9:101573000-101580800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr9:101573000-101586600	Weak transcription	Esophagus	oesophagus
16	chr9:101573000-101612800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr9:101573600-101581200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:101573800-101586000	Weak transcription	Fetal Intestine Large	intestine
19	chr9:101574000-101575600	Weak transcription	NHDF-Ad	bronchial
20	chr9:101574000-101580800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr9:101574000-101585800	Weak transcription	Primary T cells from cord blood	blood
22	chr9:101574400-101575200	Weak transcription	K562	blood
23	chr9:101574400-101580600	Weak transcription	Fetal Intestine Small	intestine
24	chr9:101574400-101585200	Weak transcription	Stomach Mucosa	stomach

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