Variant report

Variant	rs10121156
Chromosome Location	chr9:85644581-85644582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1010480	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10115768	0.84[EUR][1000 genomes]
rs10116216	0.87[AMR][1000 genomes]
rs10116254	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10121204	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10121395	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10126033	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10746694	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10780563	0.80[EUR][1000 genomes]
rs10780565	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10780567	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10867925	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10867926	0.82[AMR][1000 genomes]
rs10867928	0.82[EUR][1000 genomes]
rs10867929	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13302349	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1393562	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1393564	0.84[EUR][1000 genomes]
rs1393565	0.81[EUR][1000 genomes]
rs1502682	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1502685	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1546315	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1546316	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1546317	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1580881	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1976455	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2279814	0.82[EUR][1000 genomes]
rs29001503	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4146960	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4146961	0.81[EUR][1000 genomes]
rs4348583	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4460464	0.87[AMR][1000 genomes]
rs4628323	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4877244	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6559694	0.80[EUR][1000 genomes]
rs6559695	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7019227	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7024864	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7045914	0.83[EUR][1000 genomes]
rs7854101	0.80[EUR][1000 genomes]
rs7866666	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7867614	0.80[EUR][1000 genomes]
rs952450	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs998119	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85617200-85645800	Weak transcription	Stomach Mucosa	stomach
2	chr9:85621000-85645400	Weak transcription	Gastric	stomach
3	chr9:85639800-85645000	Enhancers	HMEC	breast
4	chr9:85640400-85656400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:85641400-85644800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:85641400-85645000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:85641400-85645000	Enhancers	NHEK	skin
8	chr9:85642400-85645400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:85643000-85645000	Enhancers	A549	lung
10	chr9:85643200-85645400	Weak transcription	Osteobl	bone
11	chr9:85643200-85645600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:85643200-85645600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr9:85643400-85644800	Enhancers	Fetal Intestine Large	intestine
14	chr9:85643400-85644800	Weak transcription	NHDF-Ad	bronchial
15	chr9:85643400-85645000	Weak transcription	Esophagus	oesophagus
16	chr9:85643400-85645600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr9:85644200-85644600	Weak transcription	Placenta	Placenta
18	chr9:85644200-85644800	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr9:85644200-85645600	Weak transcription	Pancreas	Pancrea
20	chr9:85644200-85649600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:85644200-85654800	Weak transcription	Fetal Intestine Small	intestine
22	chr9:85644400-85644600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:85644400-85644800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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