Variant report

Variant	rs10121263
Chromosome Location	chr1:172044499-172044500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10115941	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10115961	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10116683	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10122320	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10967508	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10967510	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12338516	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12347441	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12377794	0.99[ASN][1000 genomes]
rs16910732	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28370964	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35921975	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36070998	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7021784	0.84[EUR][1000 genomes]
rs7031976	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7041132	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72717880	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172010600-172051400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:172038200-172055400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:172038200-172058800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:172040600-172076600	Weak transcription	Brain Angular Gyrus	brain
5	chr1:172041000-172054000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:172041200-172060800	Weak transcription	Brain Substantia Nigra	brain
7	chr1:172041400-172052000	Weak transcription	HMEC	breast
8	chr1:172041400-172061600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:172041600-172061800	Weak transcription	Brain Anterior Caudate	brain
10	chr1:172041800-172052000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:172041800-172061200	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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