Variant report

Variant	rs10122151
Chromosome Location	chr9:115919885-115919886
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:115873156..115875899-chr9:115915858..115921312,4	MCF-7	breast:
2	chr9:115919736..115921795-chr9:115923893..115926255,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225684	Chromatin interaction
ENSG00000231528	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10081639	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10081701	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10118429	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10121981	0.99[ASN][1000 genomes]
rs10817454	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981662	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10981679	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981686	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10981687	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1128786	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236187	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12346816	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12684417	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16910202	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17762642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28574672	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3810910	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3934969	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68122369	0.90[ASN][1000 genomes]
rs7021999	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7029408	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7038260	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72758243	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7467537	0.83[ASN][1000 genomes]
rs7849150	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs7850672	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850723	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7851935	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7854882	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855105	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856067	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7860472	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7863351	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7865125	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9695716	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831691	chr9:115754699-115929459	Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
5	nsv1051654	chr9:115881588-115935663	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1035406	chr9:115883978-116003980	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv540201	chr9:115883978-116003980	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv466507	chr9:115905850-115936903	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv615213	chr9:115905850-115936903	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10122151	FKBP15	cis	brain	BrainEAC

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115914000-115923600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:115914000-115925000	Weak transcription	Fetal Kidney	kidney
3	chr9:115914200-115920200	Weak transcription	Brain Germinal Matrix	brain
4	chr9:115914200-115922800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:115914200-115922800	Weak transcription	Fetal Heart	heart
6	chr9:115914200-115923600	Weak transcription	A549	lung
7	chr9:115914200-115923800	Weak transcription	HUVEC	blood vessel
8	chr9:115914400-115920200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:115914400-115925000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:115914600-115920400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:115914800-115920600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr9:115914800-115926400	Weak transcription	Fetal Brain Male	brain
13	chr9:115915000-115920000	Weak transcription	Esophagus	oesophagus
14	chr9:115915000-115920400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr9:115915000-115923000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:115915000-115923400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:115915000-115923600	Weak transcription	Colonic Mucosa	Colon
18	chr9:115915200-115920200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:115915200-115920600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:115915200-115923400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:115915200-115930200	Weak transcription	Stomach Mucosa	stomach
22	chr9:115915400-115920400	Weak transcription	Gastric	stomach
23	chr9:115915400-115920600	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:115915400-115923400	Weak transcription	Hela-S3	cervix
25	chr9:115915400-115925200	Weak transcription	Small Intestine	intestine
26	chr9:115916800-115922200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr9:115917000-115921000	Weak transcription	NH-A	brain
28	chr9:115917200-115920200	Weak transcription	Ovary	ovary
29	chr9:115917200-115920400	Transcr. at gene 5' and 3'	Brain Hippocampus Middle	brain
30	chr9:115917400-115920000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr9:115917400-115923000	Weak transcription	NHDF-Ad	bronchial
32	chr9:115917600-115920000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:115917600-115920200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:115917600-115923800	Weak transcription	HepG2	liver
35	chr9:115917800-115920000	Genic enhancers	Primary monocytes fromperipheralblood	blood
36	chr9:115917800-115920200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr9:115917800-115949400	Strong transcription	Placenta	Placenta
38	chr9:115918000-115920000	Weak transcription	Liver	Liver
39	chr9:115918200-115923600	Weak transcription	Psoas Muscle	Psoas
40	chr9:115918400-115920800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:115918400-115921800	Weak transcription	Primary B cells from cord blood	blood
42	chr9:115918400-115923400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr9:115918400-115947200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr9:115918600-115922000	Strong transcription	NHEK	skin
45	chr9:115918600-115922800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:115918600-115922800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr9:115918600-115923000	Weak transcription	GM12878-XiMat	blood
48	chr9:115918600-115923600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr9:115918600-115924400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr9:115918600-115926400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links