Variant report

Variant	rs10122591
Chromosome Location	chr9:95822742-95822743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95819533..95824260-chr9:95855982..95859349,6	K562	blood:
2	chr9:95818120..95822805-chr9:95894646..95898384,4	K562	blood:
3	chr9:95822333..95825278-chr9:95837106..95839130,2	K562	blood:
4	chr9:95818455..95825266-chr9:95831322..95836031,9	K562	blood:
5	chr9:95816364..95826268-chr9:95852309..95863275,20	MCF-7	breast:
6	chr9:95791616..95793622-chr9:95821963..95824381,2	MCF-7	breast:
7	chr9:95639787..95641673-chr9:95820453..95823030,2	K562	blood:
8	chr9:95819594..95823966-chr9:95894549..95897415,5	MCF-7	breast:
9	chr9:95820491..95823416-chr9:96211285..96213612,2	K562	blood:
10	chr9:95819521..95827100-chr9:95855273..95859349,14	K562	blood:
11	chr9:95821374..95823833-chr9:95837106..95839340,2	K562	blood:
12	chr9:95819208..95822509-chr9:95822531..95826993,4	K562	blood:
13	chr9:95821315..95824272-chr9:95832580..95834111,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000131669	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000165233	Chromatin interaction
ENSG00000127081	Chromatin interaction
ENSG00000127084	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000157303	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10115063	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10116083	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12335489	1.00[AMR][1000 genomes]
rs12344304	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349778	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893575	chr9:95781040-95854013	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv893577	chr9:95812707-95872216	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv893578	chr9:95818641-95887320	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95820600-95822800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:95820800-95827600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr9:95821000-95822800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:95821000-95822800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:95821000-95823000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr9:95821000-95827400	Flanking Active TSS	GM12878-XiMat	blood
7	chr9:95821200-95823400	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr9:95821400-95823000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:95821400-95823200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:95821400-95823200	Weak transcription	HSMM	muscle
11	chr9:95821400-95823600	Bivalent Enhancer	Fetal Stomach	stomach
12	chr9:95821400-95823800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:95821400-95824400	Enhancers	Lung	lung
14	chr9:95821600-95822800	Flanking Active TSS	Primary B cells from peripheral blood	blood
15	chr9:95821600-95822800	Flanking Active TSS	Fetal Thymus	thymus
16	chr9:95821600-95822800	Weak transcription	NHLF	lung
17	chr9:95821600-95823000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr9:95821600-95823200	Weak transcription	Aorta	Aorta
19	chr9:95821600-95823600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr9:95821600-95823800	Flanking Active TSS	K562	blood
21	chr9:95821600-95824800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
22	chr9:95821600-95827400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr9:95821600-95827600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
24	chr9:95821800-95822800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr9:95821800-95822800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr9:95821800-95822800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
27	chr9:95821800-95822800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr9:95821800-95823200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr9:95821800-95823800	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr9:95821800-95824000	Enhancers	A549	lung
31	chr9:95821800-95824200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:95821800-95824200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr9:95821800-95824800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr9:95821800-95824800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr9:95821800-95825000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr9:95821800-95825000	Flanking Active TSS	HepG2	liver
37	chr9:95821800-95825400	Flanking Active TSS	Primary T cells from cord blood	blood
38	chr9:95821800-95827400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr9:95822000-95822800	Enhancers	H1 Cell Line	embryonic stem cell
40	chr9:95822000-95822800	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr9:95822000-95822800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:95822000-95823000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
43	chr9:95822000-95823000	Weak transcription	NH-A	brain
44	chr9:95822000-95824000	Enhancers	Placenta	Placenta
45	chr9:95822000-95824200	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr9:95822000-95824600	Enhancers	Gastric	stomach
47	chr9:95822000-95825000	Enhancers	Spleen	Spleen
48	chr9:95822000-95825200	Enhancers	Liver	Liver
49	chr9:95822000-95825600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr9:95822000-95825600	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links