Variant report

Variant	rs10122962
Chromosome Location	chr9:8493394-8493395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10081689	1.00[EUR][1000 genomes]
rs10114927	1.00[EUR][1000 genomes]
rs10115800	1.00[EUR][1000 genomes]
rs10116716	0.81[AFR][1000 genomes]
rs10117948	1.00[EUR][1000 genomes]
rs10120463	0.84[YRI][hapmap];0.85[AFR][1000 genomes]
rs10121643	1.00[EUR][1000 genomes]
rs10121790	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10122665	0.81[AFR][1000 genomes]
rs10124229	1.00[EUR][1000 genomes]
rs10977166	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs10977195	1.00[EUR][1000 genomes]
rs12000186	1.00[EUR][1000 genomes]
rs12341471	1.00[EUR][1000 genomes]
rs12346849	1.00[EUR][1000 genomes]
rs12347522	1.00[EUR][1000 genomes]
rs12349550	1.00[EUR][1000 genomes]
rs16927703	1.00[EUR][1000 genomes]
rs16928061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28380514	1.00[EUR][1000 genomes]
rs28756234	1.00[EUR][1000 genomes]
rs6477297	1.00[EUR][1000 genomes]
rs7035511	1.00[EUR][1000 genomes]
rs7039196	1.00[EUR][1000 genomes]
rs7048985	1.00[EUR][1000 genomes]
rs73640921	1.00[EUR][1000 genomes]
rs73640925	1.00[EUR][1000 genomes]
rs73640927	1.00[EUR][1000 genomes]
rs73640933	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv892226	chr9:8435525-8522326	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv892229	chr9:8485201-8520366	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8420600-8557600	Weak transcription	Aorta	Aorta
2	chr9:8442200-8522200	Weak transcription	Liver	Liver
3	chr9:8448000-8494800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:8464600-8494200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:8478200-8504000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:8479200-8504000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:8481200-8500800	Weak transcription	Fetal Intestine Small	intestine
8	chr9:8483800-8524800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:8486000-8493800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:8486000-8495000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:8486000-8508400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:8486000-8519400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr9:8486000-8522200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:8486200-8501800	Weak transcription	Fetal Heart	heart
15	chr9:8486200-8504600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr9:8486200-8509000	Weak transcription	Brain Anterior Caudate	brain
17	chr9:8486200-8517200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr9:8486200-8522800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr9:8486200-8523200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:8486200-8531600	Weak transcription	Fetal Kidney	kidney
21	chr9:8486400-8494000	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:8486400-8494400	Weak transcription	Brain Angular Gyrus	brain
23	chr9:8486400-8494400	Weak transcription	Ovary	ovary
24	chr9:8486600-8507200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr9:8487000-8499400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:8487000-8521200	Weak transcription	Brain Germinal Matrix	brain
27	chr9:8487000-8521200	Weak transcription	Dnd41	blood
28	chr9:8489400-8493600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:8489600-8495000	Strong transcription	Fetal Lung	lung
30	chr9:8492400-8493800	Weak transcription	Fetal Brain Male	brain
31	chr9:8492400-8503400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr9:8492400-8504200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr9:8492400-8528800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr9:8492600-8503400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr9:8492800-8493600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:8492800-8495000	Enhancers	Brain Substantia Nigra	brain
37	chr9:8493000-8494800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr9:8493000-8518000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:8493000-8521200	Weak transcription	Fetal Muscle Leg	muscle
40	chr9:8493200-8498400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:8493200-8499600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr9:8493200-8500800	Weak transcription	Pancreas	Pancrea
43	chr9:8493200-8523200	Weak transcription	Fetal Stomach	stomach
44	chr9:8493200-8531200	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links