Variant report

Variant	rs10123341
Chromosome Location	chr9:92753915-92753916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92753705..92756579-chr9:92759778..92762031,2	MCF-7	breast:
2	chr9:92218844..92221552-chr9:92753347..92755241,2	MCF-7	breast:
3	chr9:92680975..92683191-chr9:92752643..92754269,2	MCF-7	breast:
4	chr9:92741964..92746302-chr9:92752977..92756296,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10115156	1.00[EUR][1000 genomes]
rs10117496	1.00[EUR][1000 genomes]
rs10119017	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10122355	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10993587	0.80[AFR][1000 genomes]
rs12340516	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12340902	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12349276	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12351881	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16906038	0.80[AFR][1000 genomes]
rs28653470	1.00[EUR][1000 genomes]
rs2890110	0.80[AFR][1000 genomes]
rs7023449	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7044617	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9775307	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv3402834	chr9:92753532-92758030	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92745000-92755400	Weak transcription	Psoas Muscle	Psoas
2	chr9:92748600-92754400	Weak transcription	Lung	lung
3	chr9:92748800-92754000	Weak transcription	Esophagus	oesophagus
4	chr9:92750200-92759800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:92750400-92755600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:92750600-92755400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:92750800-92755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:92751600-92754200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:92751600-92754400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:92751600-92756000	Weak transcription	HSMMtube	muscle
11	chr9:92751600-92756200	Weak transcription	HSMM	muscle
12	chr9:92751800-92756000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:92752200-92754000	Weak transcription	Fetal Heart	heart
14	chr9:92752200-92755200	Weak transcription	Primary B cells from cord blood	blood
15	chr9:92752200-92757400	Enhancers	Stomach Mucosa	stomach
16	chr9:92752400-92761600	Weak transcription	Aorta	Aorta
17	chr9:92752600-92757400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr9:92752800-92754200	Weak transcription	Placenta	Placenta
19	chr9:92752800-92754400	Weak transcription	Left Ventricle	heart
20	chr9:92752800-92754400	Weak transcription	Right Ventricle	heart
21	chr9:92752800-92754600	Weak transcription	Gastric	stomach
22	chr9:92752800-92754600	Weak transcription	Right Atrium	heart
23	chr9:92752800-92759600	Enhancers	Liver	Liver
24	chr9:92753000-92754000	Enhancers	Brain Germinal Matrix	brain
25	chr9:92753200-92754200	Enhancers	NHEK	skin
26	chr9:92753200-92754800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr9:92753200-92757200	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr9:92753400-92754200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:92753400-92756200	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr9:92753600-92754200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:92753600-92754200	Enhancers	Brain Substantia Nigra	brain
32	chr9:92753600-92757800	Enhancers	Pancreas	Pancrea
33	chr9:92753600-92758000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:92753600-92765400	Enhancers	Fetal Intestine Large	intestine
35	chr9:92753800-92754600	Weak transcription	Brain Inferior Temporal Lobe	brain

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