Variant report

Variant	rs10123853
Chromosome Location	chr9:21350910-21350911
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10120531	1.00[YRI][hapmap]
rs10121706	1.00[YRI][hapmap]
rs10124601	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10124647	1.00[AFR][1000 genomes]
rs10124651	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10156589	1.00[YRI][hapmap]
rs10964967	1.00[YRI][hapmap]
rs12337031	1.00[YRI][hapmap]
rs12337060	1.00[YRI][hapmap]
rs12342433	1.00[YRI][hapmap]
rs28423694	1.00[AFR][1000 genomes]
rs28507568	1.00[AFR][1000 genomes]
rs28668150	1.00[AFR][1000 genomes]
rs28697058	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	nsv892736	chr9:21327141-21391698	Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv968602	chr9:21349789-21352300	Bivalent Enhancer Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21350600-21351000	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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