Variant report

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:92681413..92682319-chr9:92861601..92862185,2	MCF-7	breast:
2	chr9:92218658..92223647-chr9:92860097..92866006,11	MCF-7	breast:
3	chr9:92218170..92219779-chr9:92860689..92862604,2	MCF-7	breast:
4	chr9:92217628..92218654-chr9:92861302..92862433,8	MCF-7	breast:
5	chr9:92217541..92219304-chr9:92861323..92862818,15	MCF-7	breast:
6	chr9:92213022..92213731-chr9:92861384..92862297,6	MCF-7	breast:
7	chr9:92740215..92741137-chr9:92861382..92862059,2	MCF-7	breast:
8	chr9:92857591..92859341-chr9:92860040..92862686,2	MCF-7	breast:
9	chr9:92212338..92213668-chr9:92861349..92862183,3	MCF-7	breast:
10	chr9:92207554..92215968-chr9:92858794..92866301,17	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction
ENSG00000237626	Chromatin interaction

rSNPs within LD-proxies of this variant (count:5)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3380801	chr9:92859132-92863030	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
5	esv3341727	chr9:92859682-92862480	Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	esv3382751	chr9:92859832-92863030	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92848800-92862200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:92855600-92864400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr9:92857000-92862400	Enhancers	Fetal Brain Male	brain
4	chr9:92857800-92862800	Enhancers	Brain Germinal Matrix	brain
5	chr9:92857800-92862800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr9:92858600-92870200	Weak transcription	Right Atrium	heart
7	chr9:92858800-92864400	Weak transcription	Fetal Intestine Large	intestine
8	chr9:92860000-92867600	Weak transcription	Psoas Muscle	Psoas
9	chr9:92860000-92868400	Weak transcription	Liver	Liver
10	chr9:92860400-92864800	Weak transcription	Left Ventricle	heart
11	chr9:92860800-92870200	Weak transcription	Right Ventricle	heart
12	chr9:92861000-92862800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr9:92861200-92862400	Enhancers	Ovary	ovary
14	chr9:92861200-92862800	Enhancers	HSMM	muscle
15	chr9:92861400-92862000	Enhancers	Rectal Smooth Muscle	rectum
16	chr9:92861600-92868400	Weak transcription	HSMMtube	muscle
17	chr9:92861800-92862400	Enhancers	Fetal Lung	lung
18	chr9:92861800-92866200	Weak transcription	Fetal Kidney	kidney
19	chr9:92861800-92869200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr9:92861800-92870200	Weak transcription	Pancreas	Pancrea

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