Variant report

Variant	rs10125032
Chromosome Location	chr9:116028857-116028858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC31A1-1	chr9:116028516-116029215	NONHSAT134328

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10123780	0.90[AFR][1000 genomes]
rs11794214	0.80[AFR][1000 genomes]
rs12337498	0.90[AFR][1000 genomes]
rs12337709	0.90[AFR][1000 genomes]
rs12342489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16931988	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3087548	0.90[AFR][1000 genomes]
rs3810918	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115996000-116031600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr9:116008200-116037000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:116009600-116029800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:116010200-116031800	Weak transcription	Fetal Heart	heart
5	chr9:116017600-116031800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr9:116018600-116036000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr9:116019600-116033200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:116020000-116029600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr9:116020600-116031600	Weak transcription	HUVEC	blood vessel
10	chr9:116021000-116036000	Strong transcription	Fetal Stomach	stomach
11	chr9:116021200-116031600	Weak transcription	Fetal Brain Male	brain
12	chr9:116021200-116032200	Weak transcription	Small Intestine	intestine
13	chr9:116021200-116032600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:116021400-116029800	Weak transcription	Primary B cells from cord blood	blood
15	chr9:116021400-116032200	Weak transcription	Pancreas	Pancrea
16	chr9:116022400-116036600	Weak transcription	Stomach Mucosa	stomach
17	chr9:116022600-116029400	Weak transcription	NH-A	brain
18	chr9:116022600-116031600	Weak transcription	NHDF-Ad	bronchial
19	chr9:116022800-116029000	Weak transcription	A549	lung
20	chr9:116022800-116030200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr9:116022800-116030600	Weak transcription	K562	blood
22	chr9:116022800-116031600	Weak transcription	Psoas Muscle	Psoas
23	chr9:116022800-116031800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:116022800-116032200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr9:116022800-116032200	Weak transcription	Esophagus	oesophagus
26	chr9:116022800-116036600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr9:116023000-116029800	Weak transcription	Thymus	Thymus
28	chr9:116023000-116029800	Weak transcription	Spleen	Spleen
29	chr9:116023000-116031400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr9:116023000-116031800	Weak transcription	NHLF	lung
31	chr9:116023000-116032200	Weak transcription	Gastric	stomach
32	chr9:116023000-116033000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:116023000-116033200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr9:116023000-116036800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:116023200-116031600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr9:116023200-116031800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr9:116023200-116031800	Weak transcription	Colon Smooth Muscle	Colon
38	chr9:116023400-116030200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:116023400-116032200	Weak transcription	Right Ventricle	heart
40	chr9:116023400-116034200	Weak transcription	Colonic Mucosa	Colon
41	chr9:116023600-116032200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr9:116024200-116030800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr9:116024600-116030400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr9:116024600-116031600	Weak transcription	Hela-S3	cervix
45	chr9:116024800-116029000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:116024800-116029000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:116024800-116029800	Weak transcription	Brain Substantia Nigra	brain
48	chr9:116024800-116029800	Weak transcription	Osteobl	bone
49	chr9:116024800-116030200	Weak transcription	Ovary	ovary
50	chr9:116024800-116030400	Weak transcription	GM12878-XiMat	blood

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