Variant report

Variant	rs10128049
Chromosome Location	chr1:94591899-94591900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28437771	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28706746	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57594899	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72960501	0.83[EUR][1000 genomes]
rs74102103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74102104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74102105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74104524	0.83[EUR][1000 genomes]
rs74104526	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74104531	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7548816	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv870932	chr1:94579053-94607607	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv871679	chr1:94579426-94598568	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv871502	chr1:94579426-94607607	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv871306	chr1:94579426-94609478	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv871210	chr1:94579426-94629643	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94587000-94592400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:94588600-94595000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:94588600-94596400	Weak transcription	Osteobl	bone
4	chr1:94588600-94596600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:94590800-94592200	Enhancers	A549	lung
6	chr1:94591400-94592000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:94591400-94592000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:94591400-94592000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:94591400-94592000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr1:94591400-94592000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:94591400-94592000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:94591400-94592000	Enhancers	Fetal Muscle Leg	muscle
13	chr1:94591400-94592000	Enhancers	Placenta	Placenta
14	chr1:94591400-94592000	Enhancers	Left Ventricle	heart
15	chr1:94591400-94592000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr1:94591400-94592200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:94591400-94592200	Enhancers	Liver	Liver
18	chr1:94591400-94592200	Enhancers	Fetal Kidney	kidney
19	chr1:94591400-94592400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr1:94591400-94592400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:94591400-94592400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:94591400-94592400	Enhancers	Adipose Nuclei	Adipose
23	chr1:94591600-94592000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:94591600-94592000	Enhancers	Fetal Intestine Small	intestine
25	chr1:94591600-94592000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr1:94591600-94592200	Enhancers	H1 Cell Line	embryonic stem cell
27	chr1:94591600-94592200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:94591600-94592200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr1:94591600-94592400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr1:94591600-94592400	Flanking Active TSS	HepG2	liver
31	chr1:94591600-94592400	Enhancers	HSMMtube	muscle
32	chr1:94591800-94592000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:94591800-94592000	Enhancers	Pancreas	Pancrea
34	chr1:94591800-94592000	Enhancers	Right Atrium	heart
35	chr1:94591800-94592200	Enhancers	Fetal Intestine Large	intestine
36	chr1:94591800-94592400	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr1:94591800-94592400	Enhancers	HSMM	muscle
38	chr1:94591800-94593200	Enhancers	HUVEC	blood vessel

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