Variant report

Variant	rs10129332
Chromosome Location	chr14:67658113-67658114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10083341	1.00[AMR][1000 genomes]
rs10140963	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs10145458	0.85[YRI][hapmap]
rs17104100	1.00[AMR][1000 genomes]
rs59030512	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv902060	chr14:67417083-67760538	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv832821	chr14:67590418-67828169	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv1040257	chr14:67634585-67762806	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv983938	chr14:67656148-67670777	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67618400-67658200	Weak transcription	Brain Angular Gyrus	brain
2	chr14:67639600-67658600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr14:67645800-67658200	Weak transcription	Brain Anterior Caudate	brain
4	chr14:67647800-67658400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:67648200-67658200	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:67648200-67658200	Weak transcription	Brain Substantia Nigra	brain
7	chr14:67648200-67660400	Weak transcription	Ovary	ovary
8	chr14:67648400-67658400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr14:67648400-67658800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:67654800-67658200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:67654800-67658600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:67654800-67658600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:67655000-67658400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:67655000-67661800	Weak transcription	A549	lung
15	chr14:67655200-67658200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:67655400-67658200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:67655400-67658200	Weak transcription	HSMMtube	muscle
18	chr14:67655400-67658800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:67656200-67658200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:67656200-67658200	Weak transcription	HSMM	muscle
21	chr14:67656400-67658200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:67656400-67658400	Weak transcription	Osteobl	bone
23	chr14:67657800-67658400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:67658000-67658200	Enhancers	Brain Cingulate Gyrus	brain
25	chr14:67658000-67658400	Enhancers	Brain Inferior Temporal Lobe	brain

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