Variant report

Variant	rs10129435
Chromosome Location	chr14:24832525-24832526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000139899	Chromatin interaction
ENSG00000100445	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000100441	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10130279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10139343	0.87[AFR][1000 genomes]
rs10141054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10148620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12050181	0.92[ASN][1000 genomes]
rs12050389	0.84[ASN][1000 genomes]
rs12433338	0.84[ASN][1000 genomes]
rs13379236	0.83[AFR][1000 genomes]
rs2332325	0.83[ASN][1000 genomes]
rs28393208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28457795	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28575809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28637873	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28695950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24831400-24832800	Enhancers	Osteobl	bone
2	chr14:24831400-24834200	Weak transcription	Placenta	Placenta
3	chr14:24831400-24834400	Weak transcription	HSMMtube	muscle
4	chr14:24831400-24835000	Weak transcription	Esophagus	oesophagus
5	chr14:24831600-24834200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:24831600-24834200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:24831600-24834200	Weak transcription	NHLF	lung
8	chr14:24831800-24833400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:24832200-24834000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:24832200-24834200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:24832200-24834400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:24832200-24834400	Weak transcription	HSMM	muscle
13	chr14:24832200-24835200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:24832400-24833600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:24832400-24834200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:24832400-24834200	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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