Variant report

Variant	rs10129646
Chromosome Location	chr14:68758575-68758576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68716325..68719103-chr14:68757433..68761699,4	MCF-7	breast:
2	chr14:68750556..68752152-chr14:68758382..68760171,2	K562	blood:
3	chr14:68758495..68760542-chr14:68773448..68775284,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1885013	0.97[ASN][1000 genomes]
rs1950897	0.97[ASN][1000 genomes]
rs2104047	0.95[ASN][1000 genomes]
rs3784099	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7148416	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7148882	0.95[ASN][1000 genomes]
rs8015139	0.93[ASN][1000 genomes]
rs911263	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68746000-68758600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr14:68746600-68764600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:68750400-68761200	Weak transcription	Pancreas	Pancrea
4	chr14:68750600-68758600	Weak transcription	Psoas Muscle	Psoas
5	chr14:68750600-68759600	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:68750800-68761800	Weak transcription	Left Ventricle	heart
7	chr14:68751800-68758600	Weak transcription	Right Atrium	heart
8	chr14:68752200-68759200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:68752400-68758600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:68752400-68761600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:68752400-68765000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:68752400-68768800	Weak transcription	Aorta	Aorta
13	chr14:68752600-68758600	Weak transcription	Fetal Stomach	stomach
14	chr14:68752600-68761600	Weak transcription	Spleen	Spleen
15	chr14:68752600-68763800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr14:68753400-68768800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr14:68753600-68758800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr14:68753600-68768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:68753600-68768800	Weak transcription	Dnd41	blood
20	chr14:68753800-68758600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:68754000-68758600	Weak transcription	Fetal Thymus	thymus
22	chr14:68754000-68759000	Weak transcription	Thymus	Thymus
23	chr14:68754000-68760200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:68755400-68758600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr14:68755400-68759000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr14:68756400-68763400	Enhancers	Primary B cells from peripheral blood	blood
27	chr14:68756600-68759600	Enhancers	Primary B cells from cord blood	blood
28	chr14:68756600-68765200	Enhancers	Fetal Intestine Small	intestine
29	chr14:68757000-68759200	Weak transcription	Small Intestine	intestine
30	chr14:68757600-68759800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr14:68757800-68765200	Enhancers	Fetal Intestine Large	intestine
32	chr14:68758000-68758800	Enhancers	Lung	lung
33	chr14:68758000-68759000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr14:68758000-68759600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr14:68758000-68759600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr14:68758000-68760000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr14:68758000-68760400	Enhancers	Primary T cells fromperipheralblood	blood
38	chr14:68758000-68760600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:68758000-68761800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr14:68758200-68759800	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr14:68758200-68759800	Enhancers	Placenta Amnion	Placenta Amnion
42	chr14:68758200-68760200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr14:68758200-68760400	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr14:68758200-68760400	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr14:68758200-68760600	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr14:68758200-68760600	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr14:68758200-68760600	Enhancers	K562	blood
48	chr14:68758200-68761200	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr14:68758200-68761800	Enhancers	HepG2	liver
50	chr14:68758200-68762200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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